Petab

Latest version: v0.5.0

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0.1.12

* Documentation update:
* Added SBML2Julia to list of tools supporting PEtab
* Extended PEtab introduction
* Tutorial for creating PEtab files
* Minor fix: Default argument for optional 'model' parameter in
`petab.lint.check_condition_df`` (PEtab-dev/PEtab477)

0.1.11

* Function for generating synthetic data (PEtab-dev/PEtab472)
* Minor documentation updates (PEtab-dev/PEtab470)

0.1.10

* Fixed deployment setup, no further changes.*

0.1.9

Library:

* Allow URL as filenames for YAML files and SBML models (Closes PEtab-dev/PEtab187) (PEtab-dev/PEtab459)
* Allow model time in observable formulas (PEtab-dev/PEtab445)
* Make float parsing from CSV round-trip (PEtab-dev/PEtab444)
* Validator: Error message for missing IDs, with line numbers. (PEtab-dev/PEtab467)
* Validator: Detect duplicated observable IDs (PEtab-dev/PEtab446)
* Some documentation and CI fixes / updates
* Visualization: Add option to save visualization specification (PEtab-dev/PEtab457)
* Visualization: Column XValue not mandatory anymore (PEtab-dev/PEtab429)
* Visualization: Add sorting of indices of dataframes for the correct sorting
of x-values (PEtab-dev/PEtab430)
* Visualization: Default value for the column x_label in vis_spec (PEtab-dev/PEtab431)

0.1.8

Library:

* Use ``core.is_empty`` to check for empty values (PEtab-dev/PEtab434)
* Move tests to python 3.8 (PEtab-dev/PEtab435)
* Update to libcombine 0.2.6 (PEtab-dev/PEtab437)
* Make float parsing from CSV round-trip (PEtab-dev/PEtab444)
* Lint: Allow model time in observable formulas (PEtab-dev/PEtab445)
* Lint: Detect duplicated observable ids (PEtab-dev/PEtab446)
* Fix likelihood calculation with missing values (PEtab-dev/PEtab451)

Documentation:

* Move format documentation to restructuredtext format (PEtab-dev/PEtab452)
* Document all noise distributions and observable scales (PEtab-dev/PEtab452)
* Fix documentation for prior distribution (PEtab-dev/PEtab449)

Visualization:

* Make XValue column non-mandatory (PEtab-dev/PEtab429)
* Apply correct condition sorting (PEtab-dev/PEtab430)
* Apply correct default x label (PEtab-dev/PEtab431)

0.1.7

Documentation:

* Update coverage and links of supporting tools
* Update explanatory figure

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