Pharokka

Latest version: v1.7.3

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0.1.11

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* Adds CARD and VFDB databases.

0.1.10

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* Fixes issues with Genbank output files.

0.1.9

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* Fixes bug with parsing Aragorn output for some phages.
* Fixes bug with phages with no mmseqs2 PHROGs hits (for some very small phages).

0.1.8

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* Minor release.
* Fixes bug with install_databases.py.
* Adds locustag to .tbl output.

0.1.7

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* Removes hh-suite dependency to reduce run-time (redundant with e-value option).
* Adds e-value option for passing into mmseqs2.
* Adds CRISPR detection using MinCED.
* Adds tmRNA detection using Aragorn.
* Adds CDS coding density to _length_gc_cds_density.tsv.

0.1.6

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* Version update for bioconda release

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