Phenopype

Latest version: v6.1.0

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5.0.3

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bugfix:
- broken drawing function
- Pype didn't work without project

5.0.2

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bugfix:
- broken imports - refactored!
- errors when Pype doesn't find function

5.0.1

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bugfix:
- fixed detect_contour centroid calculation

5.0.0

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breaking:
- removed old plugin-module, now standalone package (pip install phenopype-plugins).
- new plugin for pytorch and ultralytics (fastSAM)
- each plugin-functions has its own dependency, which by itself will not hinder module installation ("opportunistic loading")
- use phenopype.config to set up session-wise configurations (verbosity, window size, etc.)
bugfix:
- edit_contours: drawing was not in place when using zoom memory
- fastSAM plugin now uses correct prompts ("everything" and "box")
- new class: Project_labelling: high throughput labeling of individual images without invoking the Pype class. has full GUI capabilities (e.g., zoom, rectangle mask, comments).
- new training data export: pytorch segmentation models
- proper logger for Pype in place, saves to each image dir

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4.1.1

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bugfix:
- no empty annotations!

4.1.0

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bugfix:
- fix draw QR-code mask
- fix new faster thresholding
- new plugin: predict_SAM uses the fastSAM model for prompt based image segmentation
- new function: draw_comment prints comments added via write_comment or detect_QRcode
- changed dependency: pyradiomics==3.1.0

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