Phykit

Latest version: v2.0.1

Safety actively analyzes 714875 Python packages for vulnerabilities to keep your Python projects secure.

Scan your dependencies

Page 3 of 6

1.12.2

- removed root.txt file from DVMC function. User's are now recommended to trim outgroup taxa beforehand

1.11.3

- Added an optional argument to the prune_tree function wherein instead of pruning tips specified
in the input file, those tips will be kept

1.11.1

- Modified sum of pairs score to divide the correct number
of pairs by the number of pairs in the reference alignment rather
than the query alignment alignment

1.11.0

- Added terminal_branch_stats (alias: tbs) function to examine terminal
branch lengths

1.10.1

- Modified column score and sum of pairs score to divide the correct number of
columns or pairs by the number of columns or pairs in the query alignment
rather than the reference alignment

1.10.0

-Added tip_to_tip_node_distance (alias: t2t_node_dist; t2t_nd) function to calculate
the phylogenetic distance between two leaves in a phylogeny. Distance is measured in nodes between
two leaves

Page 3 of 6

© 2025 Safety CLI Cybersecurity Inc. All Rights Reserved.