Phykit

Latest version: v2.0.1

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- Added monophyly_check (alias: is_monophyletic) function to examine monophyly
among a specified set of taxa

- Added hidden_paralogy_check (alias: clan_check) function to examine phylogenetic
tree for issues of hidden paralogy

- Added nearest_neighbor_interchange (alias: nni) function to generate all NNI moves
for a binary rooted phylogeny

- Added tip_to_tip_distance (alias: t2t_dist; t2t) function to calculate
phylogenetic distance between two leaves in a phylogeny

- Added root_tree (alias: root; rt) function to root a phylogenetic tree

- PhyKIT is now Python version 3.9 and BioPython 1.79 compatible

Has known vulnerabilities

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