Phys2bids

🚀 Enhancement

- Add additional automatic detection of the trigger based on time-domain analysis [391](https://github.com/physiopy/phys2bids/pull/391) ([drombas](https://github.com/drombas))

🏠 Internal

- Upgrade to GitHub-native Dependabot [395](https://github.com/physiopy/phys2bids/pull/395) ([dependabot-preview[bot]](https://github.com/dependabot-preview[bot]))

Authors: 2

- [dependabot-preview[bot]](https://github.com/dependabot-preview[bot])
- David Romero-Bascones ([drombas](https://github.com/drombas))

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:tada: This release contains work from a new contributor! :tada:

Thank you, David Romero-Bascones ([drombas](https://github.com/drombas)), for all your work!

🐛 Bug Fix

- correct chtrig check in phys2bids main workflow [390](https://github.com/physiopy/phys2bids/pull/390) ([drombas](https://github.com/drombas))

📝 Documentation

- Clarify installation instructions and tutorial [382](https://github.com/physiopy/phys2bids/pull/382) ([drombas](https://github.com/drombas))

🏠 Internal

- Provide the outcome of integration and documentation tests as downloadable artifacts from each Cirrus CI test page [384](https://github.com/physiopy/phys2bids/pull/384) ([vinferrer](https://github.com/vinferrer))

Authors: 2

- David Romero-Bascones ([drombas](https://github.com/drombas))
- Vicente Ferrer ([vinferrer](https://github.com/vinferrer))

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🚀 Enhancement

- Auto-detect the trigger channel based on retrieved channel names [306](https://github.com/physiopy/phys2bids/pull/306) ([vinferrer](https://github.com/vinferrer) [smoia](https://github.com/smoia))

🏠 Internal

- Testing: Use only a Windows miniconda image instead of different images for each python version [381](https://github.com/physiopy/phys2bids/pull/381) ([vinferrer](https://github.com/vinferrer))

Authors: 2

- Stefano Moia ([smoia](https://github.com/smoia))
- Vicente Ferrer ([vinferrer](https://github.com/vinferrer))

---

:tada: This release contains work from a new contributor! :tada:

Thank you, Yaroslav Halchenko ([yarikoptic](https://github.com/yarikoptic)), for all your work!

🐛 Bug Fix

- Stop using powershell as windows interpreter [379](https://github.com/physiopy/phys2bids/pull/379) ([vinferrer](https://github.com/vinferrer))
- Update contributions and remove auto all-contribution plugin [372](https://github.com/physiopy/phys2bids/pull/372) ([smoia](https://github.com/smoia))
- Replace utils.check_input_dir() with os.path.abspath() [368](https://github.com/physiopy/phys2bids/pull/368) ([vinferrer](https://github.com/vinferrer))

⚠️ Tests

- Add windows CI testing [366](https://github.com/physiopy/phys2bids/pull/366) ([vinferrer](https://github.com/vinferrer))
- Correct BIDS validation test names [365](https://github.com/physiopy/phys2bids/pull/365) ([vinferrer](https://github.com/vinferrer))

🏠 Internal

- Add .mailmap to improve `git shortlog -sn` output [378](https://github.com/physiopy/phys2bids/pull/378) ([yarikoptic](https://github.com/yarikoptic))
- Migrate testing to Cirrus CI [375](https://github.com/physiopy/phys2bids/pull/375) ([vinferrer](https://github.com/vinferrer))
- create coverage folder only in the makeenv [375](https://github.com/physiopy/phys2bids/pull/375) ([vinferrer](https://github.com/vinferrer))
- add the coverage folder to the shared folder [375](https://github.com/physiopy/phys2bids/pull/375) ([vinferrer](https://github.com/vinferrer))
- have a common folder with subfolders [375](https://github.com/physiopy/phys2bids/pull/375) ([vinferrer](https://github.com/vinferrer))
- add the coverage folder [375](https://github.com/physiopy/phys2bids/pull/375) ([vinferrer](https://github.com/vinferrer))
- add integration tests [375](https://github.com/physiopy/phys2bids/pull/375) ([vinferrer](https://github.com/vinferrer))
- do not pip in unittest_37 [375](https://github.com/physiopy/phys2bids/pull/375) ([vinferrer](https://github.com/vinferrer))
- name task properly [375](https://github.com/physiopy/phys2bids/pull/375) ([vinferrer](https://github.com/vinferrer))
- use as fingerprint_script [375](https://github.com/physiopy/phys2bids/pull/375) ([vinferrer](https://github.com/vinferrer))
- add coverage [375](https://github.com/physiopy/phys2bids/pull/375) ([vinferrer](https://github.com/vinferrer))
- don't use makeenv [375](https://github.com/physiopy/phys2bids/pull/375) ([vinferrer](https://github.com/vinferrer))
- cache name [375](https://github.com/physiopy/phys2bids/pull/375) ([vinferrer](https://github.com/vinferrer))
- cache environment folder [375](https://github.com/physiopy/phys2bids/pull/375) ([vinferrer](https://github.com/vinferrer))
- use full path in source [375](https://github.com/physiopy/phys2bids/pull/375) ([vinferrer](https://github.com/vinferrer))
- remove name option [375](https://github.com/physiopy/phys2bids/pull/375) ([vinferrer](https://github.com/vinferrer))
- save environment in working dir [375](https://github.com/physiopy/phys2bids/pull/375) ([vinferrer](https://github.com/vinferrer))
- add source command [375](https://github.com/physiopy/phys2bids/pull/375) ([vinferrer](https://github.com/vinferrer))
- create conda environment [375](https://github.com/physiopy/phys2bids/pull/375) ([vinferrer](https://github.com/vinferrer))
- add sudo command [375](https://github.com/physiopy/phys2bids/pull/375) ([vinferrer](https://github.com/vinferrer))
- add python 3.7 tests [375](https://github.com/physiopy/phys2bids/pull/375) ([vinferrer](https://github.com/vinferrer))
- use default WD [375](https://github.com/physiopy/phys2bids/pull/375) ([vinferrer](https://github.com/vinferrer))
- use 3.7 from miniconda [375](https://github.com/physiopy/phys2bids/pull/375) ([vinferrer](https://github.com/vinferrer))
- use slim version [375](https://github.com/physiopy/phys2bids/pull/375) ([vinferrer](https://github.com/vinferrer))
- retry python version [375](https://github.com/physiopy/phys2bids/pull/375) ([vinferrer](https://github.com/vinferrer))
- change to python 3.7 container [375](https://github.com/physiopy/phys2bids/pull/375) ([vinferrer](https://github.com/vinferrer))
- change task name and checkout python version [375](https://github.com/physiopy/phys2bids/pull/375) ([vinferrer](https://github.com/vinferrer))
- check working dir [375](https://github.com/physiopy/phys2bids/pull/375) ([vinferrer](https://github.com/vinferrer))
- get default phys2bids install path [375](https://github.com/physiopy/phys2bids/pull/375) ([vinferrer](https://github.com/vinferrer))
- clone done automatically [375](https://github.com/physiopy/phys2bids/pull/375) ([vinferrer](https://github.com/vinferrer))
- try without folder command [375](https://github.com/physiopy/phys2bids/pull/375) ([vinferrer](https://github.com/vinferrer))
- add ident [375](https://github.com/physiopy/phys2bids/pull/375) ([vinferrer](https://github.com/vinferrer))
- put folder in the end so it's created [375](https://github.com/physiopy/phys2bids/pull/375) ([vinferrer](https://github.com/vinferrer))
- set up working dir and save phys2bids folder for cache [375](https://github.com/physiopy/phys2bids/pull/375) ([vinferrer](https://github.com/vinferrer))
- delete some indentation [375](https://github.com/physiopy/phys2bids/pull/375) ([vinferrer](https://github.com/vinferrer))
- rename –/tmp/src/phys2bids folder to phys2bids [375](https://github.com/physiopy/phys2bids/pull/375) ([vinferrer](https://github.com/vinferrer))
- eliminate env_script line [375](https://github.com/physiopy/phys2bids/pull/375) ([vinferrer](https://github.com/vinferrer))
- use name field [375](https://github.com/physiopy/phys2bids/pull/375) ([vinferrer](https://github.com/vinferrer))
- adding cirrus CI with basic environment [375](https://github.com/physiopy/phys2bids/pull/375) ([vinferrer](https://github.com/vinferrer))
- Merge branch 'master' of https://github.com/physiopy/phys2bids [#375](https://github.com/physiopy/phys2bids/pull/375) ([vinferrer](https://github.com/vinferrer))
- delete test [375](https://github.com/physiopy/phys2bids/pull/375) ([vinferrer](https://github.com/vinferrer))
- add windows docker trial tests [375](https://github.com/physiopy/phys2bids/pull/375) ([vinferrer](https://github.com/vinferrer))

Authors: 3

- Stefano Moia ([smoia](https://github.com/smoia))
- Vicente Ferrer ([vinferrer](https://github.com/vinferrer))
- Yaroslav Halchenko ([yarikoptic](https://github.com/yarikoptic))

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🐛 Bug Fix

- Add 0 before run number to multi-run trigger plot file name [369](https://github.com/physiopy/phys2bids/pull/369) ([vinferrer](https://github.com/vinferrer))

⚠️ Tests

- Add test to check that `phys2bids` output is BIDS compatible [362](https://github.com/physiopy/phys2bids/pull/362) ([vinferrer](https://github.com/vinferrer))
- Fix call to conda environment reference in the test configuration file [363](https://github.com/physiopy/phys2bids/pull/363) ([eurunuela](https://github.com/eurunuela))

Authors: 2

- Eneko Uruñuela ([eurunuela](https://github.com/eurunuela))
- Vicente Ferrer ([vinferrer](https://github.com/vinferrer))

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🐛 Bug Fix

- BlueprintInput deepcopies inputs at initialization [358](https://github.com/physiopy/phys2bids/pull/358) ([vinferrer](https://github.com/vinferrer))

Authors: 1

- Vicente Ferrer ([vinferrer](https://github.com/vinferrer))

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