Phys2bids

:tada: This release contains work from new contributors! :tada:

Thanks for all your work!

:heart: null[merelvdthiel](https://github.com/merelvdthiel)

:heart: Inés Chavarría ([ineschh](https://github.com/ineschh))

:heart: Vittorio Iacovella ([viacovella](https://github.com/viacovella))

:heart: null[victox5](https://github.com/victox5)

🚀 Enhancement

- Add support for MATLAB files [360](https://github.com/physiopy/phys2bids/pull/360) ([vinferrer](https://github.com/vinferrer))

🐛 Bug Fix

- Refactor `io` functions related to txt file imports. [349](https://github.com/physiopy/phys2bids/pull/349) ([vinferrer](https://github.com/vinferrer))
- Refactor phys2bids interfaces into single script `io.py` [344](https://github.com/physiopy/phys2bids/pull/344) ([vinferrer](https://github.com/vinferrer))
- Rename `utils.writejson()` to `utils.write_json()` to respect style conventions [346](https://github.com/physiopy/phys2bids/pull/346) ([merelvdthiel](https://github.com/merelvdthiel))
- Replace custom function `utils.path_exists_or_make_it()` with core function `os.makedirs()` [345](https://github.com/physiopy/phys2bids/pull/345) ([merelvdthiel](https://github.com/merelvdthiel))
- Rename function `utils.writefile` to `utils.write_file` to respect style conventions [343](https://github.com/physiopy/phys2bids/pull/343) ([ineschh](https://github.com/ineschh))
- Remove `utils.move_file()` function as it is no longer used in the toolbox [342](https://github.com/physiopy/phys2bids/pull/342) ([viacovella](https://github.com/viacovella))
- Updated versions required [7](https://github.com/physiopy/phys2bids/pull/7) (vic188mhotmail.com [victox5](https://github.com/victox5))

⚠️ Pushed to `master`

- Update README.md ([smoia](https://github.com/smoia))

📝 Documentation

- Add documentation for reviewers and a checklist for PRs [315](https://github.com/physiopy/phys2bids/pull/315) ([smoia](https://github.com/smoia) [RayStick](https://github.com/RayStick))
- Add Windows installation to the documentation [329](https://github.com/physiopy/phys2bids/pull/329) ([vinferrer](https://github.com/vinferrer) [smoia](https://github.com/smoia))
- Update tutorial with latest CLI options and new folder organisation (`output/code/conversion`) [320](https://github.com/physiopy/phys2bids/pull/320) ([vinferrer](https://github.com/vinferrer) [RayStick](https://github.com/RayStick))

⚠️ Tests

- Fix typo in artifact_path [331](https://github.com/physiopy/phys2bids/pull/331) ([tsalo](https://github.com/tsalo))

🏠 Internal

- Add more "change type" options [347](https://github.com/physiopy/phys2bids/pull/347) ([smoia](https://github.com/smoia))

Authors: 9

- [merelvdthiel](https://github.com/merelvdthiel)
- [victox5](https://github.com/victox5)
- Inés Chavarría ([ineschh](https://github.com/ineschh))
- Rachael Stickland ([RayStick](https://github.com/RayStick))
- Stefano Moia ([smoia](https://github.com/smoia))
- Taylor Salo ([tsalo](https://github.com/tsalo))
- Vicente Ferrer ([vinferrer](https://github.com/vinferrer))
- Victor (vic188mhotmail.com)
- Vittorio Iacovella ([viacovella](https://github.com/viacovella))

---

🐛 Bug Fix

- Update PyYAML minimal requirements to avoid "FullLoader" attribute errors. [330](https://github.com/physiopy/phys2bids/pull/330) ([smoia](https://github.com/smoia))

Authors: 1

- Stefano Moia ([smoia](https://github.com/smoia))

---

🐛 Bug Fix

- Fix auto release workflow settings [323](https://github.com/physiopy/phys2bids/pull/323) ([smoia](https://github.com/smoia))

Authors: 1

- Stefano Moia ([smoia](https://github.com/smoia))

---

🐛 Bug Fix

- Make sure we delete testing files after finishing tests [307](https://github.com/physiopy/phys2bids/pull/307) ([vinferrer](https://github.com/vinferrer))
- Add label colours to set auto labels [318](https://github.com/physiopy/phys2bids/pull/318) ([smoia](https://github.com/smoia))
- Reduce `auto` verbosity [317](https://github.com/physiopy/phys2bids/pull/317) ([smoia](https://github.com/smoia))

📝 Documentation

- Update badges in README and documentation [322](https://github.com/physiopy/phys2bids/pull/322) ([smoia](https://github.com/smoia))
- Update zenodo info [321](https://github.com/physiopy/phys2bids/pull/321) ([smoia](https://github.com/smoia))

🏠 Internal

- Setup auto release workflow [313](https://github.com/physiopy/phys2bids/pull/313) ([smoia](https://github.com/smoia))

Authors: 2

- Stefano Moia ([smoia](https://github.com/smoia))
- Vicente Ferrer ([vinferrer](https://github.com/vinferrer))

---

🚀 Enhancement

- Make trigger-based time-offset correction more generalisable (resample time before comparing it to trigger) [308](https://github.com/physiopy/phys2bids/pull/308) (s.moiabcbl.eu)
- Format logger to make terminal (stdout) more human readable [312](https://github.com/physiopy/phys2bids/pull/312) ([vinferrer](https://github.com/vinferrer))
- Add (resampled) trigger to all output files [288](https://github.com/physiopy/phys2bids/pull/288) ([vinferrer](https://github.com/vinferrer))

🐛 Bug Fix

- Skip CI on all-contributors (s.moiabcbl.eu)
- Explicitly ignore rc files and github folder (s.moiabcbl.eu)
- Add autorc (s.moiabcbl.eu)
- Add auto badge to documentation (s.moiabcbl.eu)
- Add auto badge (s.moiabcbl.eu)
- Add workflow for auto publishing (s.moiabcbl.eu)
- Change build shield from Travis to CircleCI [297](https://github.com/physiopy/phys2bids/pull/297) ([eurunuela](https://github.com/eurunuela))
- Fix linting errors [294](https://github.com/physiopy/phys2bids/pull/294) ([eurunuela](https://github.com/eurunuela))
- Start of sampling time is now the same for all frequencies [283](https://github.com/physiopy/phys2bids/pull/283) ([vinferrer](https://github.com/vinferrer))
- Add travis wait command [284](https://github.com/physiopy/phys2bids/pull/284) ([eurunuela](https://github.com/eurunuela))
- Correct trigger channel indexing while reading AcqKnowledge files. [275](https://github.com/physiopy/phys2bids/pull/275) (s.moiabcbl.eu)

⚠️ Pushed to `master`

- Merge branch 'int/auto' (s.moiabcbl.eu)
- Update README.md (s.moiabcbl.eu)
- Update ISSUE_TEMPLATE_MEETING.md (s.moiabcbl.eu)
- Fix message shown when skipping integration test ([eurunuela](https://github.com/eurunuela))
- Update .travis.yml ([eurunuela](https://github.com/eurunuela))
- Update setup.cfg ([eurunuela](https://github.com/eurunuela))

📝 Documentation

- Update all-contributors [310](https://github.com/physiopy/phys2bids/pull/310) (s.moiabcbl.eu)
- Update documentation to reflect change from Travis CI to CircleCI [290](https://github.com/physiopy/phys2bids/pull/290) ([eurunuela](https://github.com/eurunuela))

⚠️ Tests

- Add tests for exceptions [291](https://github.com/physiopy/phys2bids/pull/291) ([eurunuela](https://github.com/eurunuela))
- Add CircleCI for automatic testing and correct integration test parameters [286](https://github.com/physiopy/phys2bids/pull/286) ([eurunuela](https://github.com/eurunuela))
- Switch from Travis to CircleCI for automatic testing [285](https://github.com/physiopy/phys2bids/pull/285) ([eurunuela](https://github.com/eurunuela))
- Add integration test for the multi run pipeline [266](https://github.com/physiopy/phys2bids/pull/266) ([eurunuela](https://github.com/eurunuela))

🏠 Internal

- Refactor txt.py chtrig parameter to improve code readability [305](https://github.com/physiopy/phys2bids/pull/305) ([vinferrer](https://github.com/vinferrer))

🖋️ Outreach

- Add link to Google Calendar [302](https://github.com/physiopy/phys2bids/pull/302) ([eurunuela](https://github.com/eurunuela))

Authors: 3

- Eneko Uruñuela ([eurunuela](https://github.com/eurunuela))
- Stefano Moia ([smoia](https://github.com/smoia))
- Vicente Ferrer ([vinferrer](https://github.com/vinferrer))

---

:tada: This release contains work from new contributors! :tada:

Thanks for all your work!

:heart: Taylor Salo ([tsalo](https://github.com/tsalo))

:heart: François Lespinasse ([sangfrois](https://github.com/sangfrois))

🚀 Enhancement

- Add the possibility to split multi-run physiological recordings [206](https://github.com/physiopy/phys2bids/pull/206) ([sangfrois](https://github.com/sangfrois) [smoia](https://github.com/smoia) [rmarkello](https://github.com/rmarkello))
- Create folder code/conversion to store trigger and channel plots, yaml and heuristic files and the call.sh file [256](https://github.com/physiopy/phys2bids/pull/256) ([vinferrer](https://github.com/vinferrer) [eurunuela](https://github.com/eurunuela))
- Add duecredit to handle citations [249](https://github.com/physiopy/phys2bids/pull/249) ([tsalo](https://github.com/tsalo) [smoia](https://github.com/smoia))
- Generate dataset_description.json and README.md when they do not exist and update the json file when the subject is missing [255](https://github.com/physiopy/phys2bids/pull/255) ([vinferrer](https://github.com/vinferrer))
- Create bids_ignore directory and redirect channels plot, trigger plot, logger output and subject log file to this directory [245](https://github.com/physiopy/phys2bids/pull/245) ([vinferrer](https://github.com/vinferrer) [smoia](https://github.com/smoia))
- Generate participants.tsv if it doesn't exist or update it if subject is missing in the file [244](https://github.com/physiopy/phys2bids/pull/244) ([eurunuela](https://github.com/eurunuela))

🐛 Bug Fix

- Auto [236](https://github.com/physiopy/phys2bids/pull/236) ([smoia](https://github.com/smoia))
- Check branch in travisCI [235](https://github.com/physiopy/phys2bids/pull/235) ([smoia](https://github.com/smoia))

⚠️ Tests

- Change os path import and linter [260](https://github.com/physiopy/phys2bids/pull/260) ([smoia](https://github.com/smoia))
- Remove redundant integration tests [259](https://github.com/physiopy/phys2bids/pull/259) ([eurunuela](https://github.com/eurunuela))
- Add unit tests for participants_file and append_list_as_row [254](https://github.com/physiopy/phys2bids/pull/254) ([sangfrois](https://github.com/sangfrois) [eurunuela](https://github.com/eurunuela))
- Update testing to use short files. [241](https://github.com/physiopy/phys2bids/pull/241) ([eurunuela](https://github.com/eurunuela))

🏠 Internal

- Add zenodo default to improve automatic release tracking [261](https://github.com/physiopy/phys2bids/pull/261) ([smoia](https://github.com/smoia))

Authors: 9

- Eneko Uruñuela ([eurunuela](https://github.com/eurunuela))
- François Lespinasse ([sangfrois](https://github.com/sangfrois))
- Rachael Stickland ([RayStick](https://github.com/RayStick))
- Ross Markello ([rmarkello](https://github.com/rmarkello))
- Stefano Moia ([smoia](https://github.com/smoia))
- Taylor Salo ([tsalo](https://github.com/tsalo))
- Vicente Ferrer ([vinferrer](https://github.com/vinferrer))

---