Plantcv

Latest version: v4.7

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4.7

What's Changed
* adding json2csv to run-workflow by joshqsumner in https://github.com/danforthcenter/plantcv/pull/1658
* docs: add eseigeldanf as a contributor for bug, tutorial, and doc by allcontributors in https://github.com/danforthcenter/plantcv/pull/1661
* changing parallelization defaults by joshqsumner in https://github.com/danforthcenter/plantcv/pull/1654
* docs: add trogers623 as a contributor for tutorial, and doc by allcontributors in https://github.com/danforthcenter/plantcv/pull/1662
* docs: add Sunitalama2 as a contributor for tutorial, and doc by allcontributors in https://github.com/danforthcenter/plantcv/pull/1663
* docs: add clhendrikse as a contributor for tutorial, and doc by allcontributors in https://github.com/danforthcenter/plantcv/pull/1665
* Update d type in fill_holes.py check by eseigel in https://github.com/danforthcenter/plantcv/pull/1668
* Add deprecation warning about `label` from the detect color card function by HaleySchuhl in https://github.com/danforthcenter/plantcv/pull/1664
* Parallelization docs linking by joshqsumner in https://github.com/danforthcenter/plantcv/pull/1653
* Fix mask kmeans output type by k034b363 in https://github.com/danforthcenter/plantcv/pull/1648
* updating install instructions by annacasto in https://github.com/danforthcenter/plantcv/pull/1656
* Update closing.py by eseigel in https://github.com/danforthcenter/plantcv/pull/1669
* Linking to scribe tutorial for parallelization by joshqsumner in https://github.com/danforthcenter/plantcv/pull/1657
* updating the getting started page by annacasto in https://github.com/danforthcenter/plantcv/pull/1659
* Update crop_position_mask.py by eseigel in https://github.com/danforthcenter/plantcv/pull/1670
* add `metadata` to `_package_index` in spectral_index.py by HaleySchuhl in https://github.com/danforthcenter/plantcv/pull/1673
* Update PlantCV installation instructions and conda environment file to use only the conda-forge channel by nfahlgren in https://github.com/danforthcenter/plantcv/pull/1681
* add tassel tutorial to gallery (merge updates to tutorial repo first) by HaleySchuhl in https://github.com/danforthcenter/plantcv/pull/1642
* Added background image input to visualize.pseudocolor by rayn-alex in https://github.com/danforthcenter/plantcv/pull/1680
* Update pinnings to NumPy v2 by nfahlgren in https://github.com/danforthcenter/plantcv/pull/1687

New Contributors
* eseigel made their first contribution in https://github.com/danforthcenter/plantcv/pull/1668

**Full Changelog**: https://github.com/danforthcenter/plantcv/compare/v4.6...v4.7

4.6

What's Changed
* Speed improvements for creating multiple ROIs by nfahlgren in https://github.com/danforthcenter/plantcv/pull/1584
* Update obj props source code by emmanuel-ferdman in https://github.com/danforthcenter/plantcv/pull/1611
* docs: add emmanuel-ferdman as a contributor for bug, and doc by allcontributors in https://github.com/danforthcenter/plantcv/pull/1612
* docs: add jbraley1107 as a contributor for review, and userTesting by allcontributors in https://github.com/danforthcenter/plantcv/pull/1614
* Obj size ecdf docs bugfix by HaleySchuhl in https://github.com/danforthcenter/plantcv/pull/1621
* docs: add hkmanching as a contributor for bug by allcontributors in https://github.com/danforthcenter/plantcv/pull/1622
* Kmeans grayscale by leafism9 in https://github.com/danforthcenter/plantcv/pull/1570
* update prune _debug to plot the other debug img by HaleySchuhl in https://github.com/danforthcenter/plantcv/pull/1619
* Make color card chip size a metadata term & Enhance debug `pcv.transform.detect_color_card` by HaleySchuhl in https://github.com/danforthcenter/plantcv/pull/1609
* Minor example code fix by mlohbihler in https://github.com/danforthcenter/plantcv/pull/1627
* docs: add mlohbihler as a contributor for bug, and doc by allcontributors in https://github.com/danforthcenter/plantcv/pull/1634
* Update arabidopsis_multi_plant_tutorial.md by zeeuqsze in https://github.com/danforthcenter/plantcv/pull/1628
* Update seed_analysis_tutorial.md by zeeuqsze in https://github.com/danforthcenter/plantcv/pull/1631
* Update morphology_tutorial.md by zeeuqsze in https://github.com/danforthcenter/plantcv/pull/1630
* Update watershed_segmentation_tutorial.md by zeeuqsze in https://github.com/danforthcenter/plantcv/pull/1632
* docs: add jbraley1107 as a contributor for bug by allcontributors in https://github.com/danforthcenter/plantcv/pull/1636
* Auto color correct wrapper by HaleySchuhl in https://github.com/danforthcenter/plantcv/pull/1625
* 1615 adding houghcircles by maliagehan in https://github.com/danforthcenter/plantcv/pull/1616
* Update grayscale_tutorial.md by zeeuqsze in https://github.com/danforthcenter/plantcv/pull/1633

New Contributors
* emmanuel-ferdman made their first contribution in https://github.com/danforthcenter/plantcv/pull/1611
* leafism9 made their first contribution in https://github.com/danforthcenter/plantcv/pull/1570
* mlohbihler made their first contribution in https://github.com/danforthcenter/plantcv/pull/1627

**Full Changelog**: https://github.com/danforthcenter/plantcv/compare/v4.5.1...v4.6

4.5.1

What's Changed
* Added NPCI and GLI indices to spectral_index by rayn-alex in https://github.com/danforthcenter/plantcv/pull/1593
* Add metadata to outputs by HaleySchuhl in https://github.com/danforthcenter/plantcv/pull/1594
* mac-and-windows-install-docs by annacasto in https://github.com/danforthcenter/plantcv/pull/1586
* Update warn to utilize the verbose global parameter by nfahlgren in https://github.com/danforthcenter/plantcv/pull/1600

**Full Changelog**: https://github.com/danforthcenter/plantcv/compare/v4.5...v4.5.1

4.5

What's Changed
* update-to-jupyter-notebook-instructions by annacasto in https://github.com/danforthcenter/plantcv/pull/1587
* Fixed bug: crash when ROI was empty by rayn-alex in https://github.com/danforthcenter/plantcv/pull/1589
* Add geospatial metadata attribute to spectral_data class by k034b363 in https://github.com/danforthcenter/plantcv/pull/1595


**Full Changelog**: https://github.com/danforthcenter/plantcv/compare/v4.4...v4.5

4.4

What's Changed
* Pin NumPy to v1.x by nfahlgren in https://github.com/danforthcenter/plantcv/pull/1560
* Using generators instead of list comprehension by natejly in https://github.com/danforthcenter/plantcv/pull/1544
* Adding missing docstrings by natejly in https://github.com/danforthcenter/plantcv/pull/1547
* Deepsource f string fix by natejly in https://github.com/danforthcenter/plantcv/pull/1542
* Style fixes by natejly in https://github.com/danforthcenter/plantcv/pull/1543
* replacing implicit enumerate by natejly in https://github.com/danforthcenter/plantcv/pull/1539
* added-buttons-to-public by ghernandez-57 in https://github.com/danforthcenter/plantcv/pull/1524
* added google colab and github buttons to thermal tutorial by ghernandez-57 in https://github.com/danforthcenter/plantcv/pull/1527
* add buttons to hyperspectral_smf_tutorial by ghernandez-57 in https://github.com/danforthcenter/plantcv/pull/1530
* add google colab and github buttons to machine_learning_tutorial.md by ghernandez-57 in https://github.com/danforthcenter/plantcv/pull/1531
* Moved self's "n" attribute initialization to init by natejly in https://github.com/danforthcenter/plantcv/pull/1528
* Unnecessary lambda removal by natejly in https://github.com/danforthcenter/plantcv/pull/1540
* 1553-combined-object-filter by k034b363 in https://github.com/danforthcenter/plantcv/pull/1555
* Constella reworks by natejly in https://github.com/danforthcenter/plantcv/pull/1541
* Suppress divide by zero and invalid number warnings by nfahlgren in https://github.com/danforthcenter/plantcv/pull/1563
* Turn plotting off after use in tests to avoid warnings by nfahlgren in https://github.com/danforthcenter/plantcv/pull/1565
* Fix casting issues that trigger NumPy deprecation warnings by nfahlgren in https://github.com/danforthcenter/plantcv/pull/1564
* auto_grid error handling by nfahlgren in https://github.com/danforthcenter/plantcv/pull/1562
* Add geospatial attributes to spectral_data class by k034b363 in https://github.com/danforthcenter/plantcv/pull/1580
* Add quality control for image color by kmurphy61 in https://github.com/danforthcenter/plantcv/pull/1574
* Add kmeans cli by k034b363 in https://github.com/danforthcenter/plantcv/pull/1571
* Add "Quick Cutto" ROI function by HaleySchuhl in https://github.com/danforthcenter/plantcv/pull/1576
* 1575 image tiling by k034b363 in https://github.com/danforthcenter/plantcv/pull/1578


**Full Changelog**: https://github.com/danforthcenter/plantcv/compare/v4.3.1...v4.4

4.3.1

What's Changed
* Prune test and doc files from sdist by nfahlgren in https://github.com/danforthcenter/plantcv/pull/1551


**Full Changelog**: https://github.com/danforthcenter/plantcv/compare/v4.3...v4.3.1

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