Pxblat

Documentation

- Update README.md with documentation links and instructions
- Update URLs in README and pyproject.toml
- Update changelog for v1.0.1

Miscellaneous Tasks

- Update upload_to_test_pypi step
- Add update command in Makefile
- Add concurrency settings for workflows
- Update version to 1.0.1
- Update version to 1.0.2
- Update version to 1.0.2
- Update version to 1.0.3

Styling

- Update ruff-pre-commit to v0.1.3

Build

- Remove depdendency

Bug Fixes

- Validate two_bit file before starting server
- Fix logic bug in \_cpsl function

Documentation

- Update version number to v0.3.10
- Update installation guide and compatibility matrix
- Rewrite toturial
- Update tutorial and conf.py
- Add code example for turorial
- Update README.md
- Polish tutorial
- Update link in tutorial
- Update tutorial.md with proper Python script execution and comments
- Add CLI documentation link to tutorial.md

Features

- Add optional parameters to `Server` constructor
- Add new options for starting the server
- Add server option 'can stop' and 'step size'
- Add documentation for Client class and methods
- Add Pure Python BLAT code for creating our own `BLAT`

Miscellaneous Tasks

- Bump actions/checkout from 3 to 4
- Bump virtualenv in /.github/workflows
- Bump docker/setup-qemu-action from 2 to 3
- Bump pypa/cibuildwheel from 2.12.3 to 2.16.2
- Update .pre-commit-config.yaml and pyproject.toml
- Add platform badge to README.md
- Remove unused code and properties
- Update release workflow configuration
- Update version to 1.0.0

Styling

- Remove unnecessary parentheses and simplify code
- Update code style badge URL

Build

- Update python dependencies

Chroe

- Update dependencies

Features

- Update version to 0.3.10

Features

- Update version to 0.3.9

Miscellaneous Tasks

- Update version to 0.3.8

Features

- Add tests for Python 3.11 and 3.12 on macOS
- Update supported Python versions

Miscellaneous Tasks

- Remove unnecessary OS Independent classifier
- Update release workflow and dependencies
- Update CIBW_BEFORE_ALL command in release.yml
- Update package installation command
- Update build dependencies
- Update cibw_build and cibw_archs configurations
- Update CIBW_BEFORE_ALL command
- Update release.yml and pyproject.toml configurations
- Update manylinux x86_64 image version
- Update cibw_build and cibw_archs values
- Remove commented out code and unused steps
- Update test command in release.yml
- Update release workflow
- Update tests.yml configuration
- Update Python version range
- Update python dependency
- Update version to 0.3.7

Refactor

- Update python version requirement and add numpy dependency

Testing

- Importing tests

Build

- Add sdist artifact to release workflow
- Update CIBW_BEFORE_ALL command
- Update build dependencies
- Use manylinux1 image and skip musllinux builds
- Add Homebrew dependencies and configure
- Update setuptools requirement
- Update python version

Ci

- Upgrade Python version to 3.11

Styling

- Update pyproject.toml version and license

Build

- Remove numpy dependency