Pxblat

Bug Fixes

- Add path

Documentation

- Customiza document

Documentation

- Add doc draft

Miscellaneous Tasks

- Bump sphinx-click from 4.3.0 to 4.4.0 in /docs
- Bump pybind11-stubgen from 0.13.0 to 0.14.0

Features

- Fallback to use source code

Miscellaneous Tasks

- Bump sphinx from 5.3.0 to 7.0.1 in /docs
- Bump linkify-it-py from 2.0.0 to 2.0.2 in /docs
- Bump sphinx-click from 4.3.0 to 4.4.0 in /docs (9)
- Bump myst-parser from 0.18.1 to 1.0.0 in /docs (8)
- Bump pybind11-stubgen from 0.13.0 to 0.14.0
- Bump ruff from 0.0.263 to 0.0.270 (5)
- Bump invoke from 2.1.1 to 2.1.2 (6)
- Bump setuptools from 67.7.2 to 67.8.0 (4)
- Bump actions/checkout from 2 to 3
- Bump docker/build-push-action from 3 to 4
- Update changelog, bump version to 0.1.4 in pyproject.toml

Build

- Refactor build script

Bug Fixes

- Fix the bug that make result consistent with c
- It is optional to output file when client
- Use strong type for status and add test

Documentation

- Add descriptions to the make targets

Features

- Complie for gfClient and gfServer
- Complie for blat
- Rename directory
- Add py binding
- Add header guide for cpp
- Add binging for gfServer
- Implement cpp gfserver
- Refactor gfserver binding
- Create static lib
- Fix c code error from cxx compiler
- Add start sever in cpp
- Add test for python
- Use invoke
- Add more ruff rule
- Do not abort when check status
- Add bindings
- Add native python for client
- Change client binding
- Foramt files
- Avoide global variable
- Pass extra parameter
- Add debug printer
- Add boolean parameter to dynamicServerQuery and errorSafeQuery functions
- Use binder
- Add docker for binder
- Use binder
- Update binding
- Add Signal class to **init**.pyi
- Use thread pool for every client
- Rename macro round to cround
- Splite handle client func
- Finish one-thread-per-client mode
- Rename pyblat to pxblat
- Create cli application
- Creat cli application
- Refactor cli
- Refactor cli
- Add benchmark data
- Use sequences as client input
- Add test for fatotwobit
- Implement server
- Add test for client and server
- Finish test and add bencharmk
- Refactor server
- Refactor test
- Improve buffer size for client to hold more content
- Add plot script
- Test for performance
- Prepare to public
- Add binder code
- Add docs draft

Miscellaneous Tasks

- Comment out removal of binder files
- Add git add . command to commit target in Makefile
- Update TODO list with new tasks and mark parser gfclient result as completed

Refactor

- Add options for gfserver
- Add cpp binding
- Comment out unused logInfo calls and replace uglyf calls with dbg calls

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