* Some extensions of external simulators interface (168). * Add basic plots of summary statistics (165). * Document high-performance infrastructure usage (159). * Self-administrative: Add social preview (158), and link to zenodo (157). * Fix external deprecations (153). * Re-add R related tests (148).
0.9.14
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* Update to rpy2 3.1.0 (major change) (140). * pandas data frames saved in database via pyarrow parquet, no longer msgpack (deprecated), with backward compatibility for old databases (141). * Redis workers no longer stop working when encountering model errors (133). * Minor edits, esp. color, size, axes options to plotting routines.
0.9.13
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* Fix dependency updates (rpy2, sklearn) and travis build. * Add option to limit number of particles for adaptive distance updates. * Rename confidence -> credible intervals and plots (Bayesian context). * Extract from database and plot reference parameter values. * Allow to plot MAP value approximations in credible interval plots. * Add a general interface to external scripts that allow using pyabc in a simple way in particular with other programing languages.
0.9.12
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* Reorganize distance module (minor API change: distance_functions -> distance, and some classes shortened accordingly) * Allow to pass parameters to Acceptor and Distance. * Make time and parameter arguments to distance functions optional. * Rewrite lazy evaluation for calibration sample in ABCSMC class. * Give default values for ABCSMC.run arguments, which set no stopping criterion. * Add function and plot for effective sample size.
0.9.11
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* Run some notebooks as part of the tests. * Automatize pypi upload via travis.
0.9.10
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* Save number of samples taken in calibration step in database. * Fix error with reported number of simulations in EpsMixin based samplers. * Fix several warnings.