--------------------------------------------------------------------------------- Added ~~~~~ - Deprecation system for pipeline functions (for when they're renamed)
Changed ~~~~~~~ - Rely on edge predicates more heavily in selection/induction/expansion transformations - Rename several functions related to the "central dogma" for more clarity
0.11.7
--------------------------------------------------------------------------------- Fixed ~~~~~ - Bug where data did not get copied to sub-graphs on induction (https://github.com/pybel/pybel/issues/#307)
0.11.6
--------------------------------------------------------------------------------- Added ~~~~~ - Added get_annotation_values function to pybel.struct.summary
Removed ~~~~~~~ - Removed Manager.ensure function
Fixed ~~~~~ - Fixed a bug in Manager.from_connection (https://github.com/pybel/pybel/issues/#306)
0.11.5
--------------------------------------------------------------------------------- Changed ~~~~~~~ - Changed arguments in pybel.struct.mutations.get_subgraphs_by_annotation - Moved utility functions in pybel.struct.mutations
0.11.4
--------------------------------------------------------------------------------- Changed ~~~~~~~ - Use BELGraph.fresh_copy instead of importing the class in mutator functions
Added ~~~~~ - Add pipeline (https://github.com/pybel/pybel/issues/301) - Testing of neighborhood functions - Added several transformation and grouping functions for BELGraph - INDRA Machine in CLI
Fixed ~~~~~ - Add missing field from BaseAbundance (https://github.com/pybel/pybel/issues/302)
0.11.3
--------------------------------------------------------------------------------- Added ~~~~~ - Made testing code and date install as part of main package(https://github.com/pybel/pybel/pull/298)
Removed ~~~~~~~ - Remove extension hook and extension loader (https://github.com/pybel/pybel/pull/300)