Pygenomeviz

Change Log

New Functionality

- Added Features Table to HTML viewer experimentally ([Demo Page](https://moshi4.github.io/pyGenomeViz/images/pgv-viewer_demo2.html))
- Added *unit* argument to `gv.set_scale_xticks()` to enable choose **Gb, Mb, Kb, bp** unit
- Added *target_strand* & *target_range* argument to `gff.extract_exon_features()`

Improvement

- Improved HTML viewer code & UI design
- Fixed to raise error in `gv.savefig_html()` for invalid figure
- Switched package manager `poetry` to `rye`

Change Log

Improvement

- Added reverse complement option to GUI

Bug Fix

- Fixed unexpected `sys.exit` when calling aligner tool

See [README](https://github.com/moshi4/pyGenomeViz) and [document](https://moshi4.github.io/pyGenomeViz/) for details.

Change Log

Improvement

- Added `track.add_features()` method

Bug Fix

- Fixed a bug that caused an error in the GUI when uploaded files contain parentheses `()`.

Change Log

Bug Fix

- Fixed bug due to matplotlib v3.8.0 changes (22)
- Fixed `savefig()` to suppress memory leak during multiple plots

Change Log

Improvement

- Added resource warning message for streamlit cloud deployment

Bug Fix

- Fixed gui run error when upload filename contains space char
- Fixed mmseqs run error when protein_id contains `|` char
- Fixed a bug that `gff.get_seqid2size()` got incorrect multi-contig size

https://github.com/moshi4/pyGenomeViz/compare/v0.4.1...v0.4.2