Pygenomeviz

Change Log

New Functionality

- Added GUI (Web browser) functionality using streamlit ([Demo Page](https://pygenomeviz.streamlit.app/))

Improvement

- Improved html viewer tooltip display content
- Changed linter `flake8` to `ruff`

https://github.com/moshi4/pyGenomeViz/compare/v0.3.2...v0.4.0

Change Log

Minor Change

- Added reverse complement option to CLI
- Added **target_strand**, **pseudogene** arguments to `gff.extract_features()` method
- Drop python3.7 support

https://github.com/moshi4/pyGenomeViz/compare/v0.3.1...v0.3.2

Change Log

Minor Change

- Added **pseudogene** option to `add_genbank_features()` method
- Added **--pseudo**, **--pseudo_color** option to `pgv-mummer` CLI (7)

https://github.com/moshi4/pyGenomeViz/compare/v0.3.0...v0.3.1

Change Log

New Functionality

- Added GFF parser class (`parser/gff.py`)
- Added GFF features plot method (`add_gff_features()`)

Minor Change

- Added `facecolor_handle_func` option to `add_genbank_features()` method
- Added `ymargin` option to `set_sublabel()` method
- Improved HTML viewer tooltip display
- Fixed duplicate colorbar display issue for same colors
- Added colorbar width, height control option to CLI (`pgv-mummer`, `pgv-mmseqs`)

Change Log

New Functionality

- Added interactive HTML viewer output functionality ([Demo Page](https://moshi4.github.io/pyGenomeViz/images/pgv-viewer-demo.html))
- Added new CLI workflow `pgv-simpleplot` for simple genome visualization

Change Log

Minor Change

- Added `set_sublabel()` method
- Set appropriate matplotlib rc(runtime configuration) params to adjust figure appearence
- Set appropriate GridSpec left-right-bottom-top params to adjust figure appearence
- Used `typing.Literal` to restrict allowed argument values