Pyincore

Added
- Class and methods to handle equation based fragilities [INCORE1-805] (https://opensource.ncsa.illinois.edu/jira/browse/INCORE1-805)
- Methods to get bulk hazard values from hazard endpoints [INCORE1-923] (https://opensource.ncsa.illinois.edu/jira/browse/INCORE1-923)
- Support hurricane in Building Damage analysis [INCORE1-696] (https://opensource.ncsa.illinois.edu/jira/browse/INCORE1-696)
- Support flood in Building Damage analysis [INCORE1-982] (https://opensource.ncsa.illinois.edu/jira/browse/INCORE1-982)
- Convert building damage output to have 3 limit state and 4 damage state [INCORE1-871] (https://opensource.ncsa.illinois.edu/jira/browse/INCORE1-871)
- Split building damage output two files: a csv table with damage results, and a json formatted file with supplemental information [INCORE1-969] (https://opensource.ncsa.illinois.edu/jira/browse/INCORE1-969)
- A utility method to add GUID (Global Unique ID) to inventory dataset in ESRI Shapefile format [INCORE1-978] (https://opensource.ncsa.illinois.edu/jira/browse/INCORE1-978)
- Utility method to do archetype mapping [INCORE1-913] (https://opensource.ncsa.illinois.edu/jira/browse/INCORE1-913)

Changed
- Demand types and units on fragility model changed from string to list [INCORE1-946] (https://opensource.ncsa.illinois.edu/jira/browse/INCORE1-946)
- Change insignificant damage probability in population dislocation [INCORE1-907] (https://opensource.ncsa.illinois.edu/jira/browse/INCORE-907)
- Replace building inventory csv with shape file in Housing Unit Allocation [INCORE1-977] (https://opensource.ncsa.illinois.edu/jira/browse/INCORE-977)
- Move test scripts from analyses to test analyses [INCORE1-987] (https://opensource.ncsa.illinois.edu/jira/browse/INCORE-987)
- Update precision of damage states, limit states and hazard values to a max of 5 digits [INCORE1-985] (https://opensource.ncsa.illinois.edu/jira/browse/INCORE1-985)

Fixed
- CGE analysis for Joplin and Seaside uses the system temp folder for temporary file instead of the installation folder [INCORE1-980] (https://opensource.ncsa.illinois.edu/jira/browse/INCORE1-980)

Added
- Building direct economic loss analysis [INCORE1-442](https://opensource.ncsa.illinois.edu/jira/browse/INCORE1-442)
- Seaside cge analysis [INCORE1-651](https://opensource.ncsa.illinois.edu/jira/browse/INCORE1-651)

Changed
- Updated Joplin CGE analysis outputs and updated the assignment of ipopt path with shutil [INCORE1-731](https://opensource.ncsa.illinois.edu/jira/browse/INCORE1-731)
- Updated Pytests to delete created datasets[INCORE1-784](https://opensource.ncsa.illinois.edu/jira/browse/INCORE1-784)
- Added missing fields in fragilitycurveset class [INCORE1-792](https://opensource.ncsa.illinois.edu/jira/browse/INCORE1-792)
- Updated dataset types to match changes in mongo dev [INCORE1-806](https://opensource.ncsa.illinois.edu/jira/browse/INCORE1-806)

Fixed
- Typos in damage probabily calculation [INCORE1-781](https://opensource.ncsa.illinois.edu/jira/browse/INCORE1-781)
- pytest client initialization by adding a conftest.py file in the pytests root folder [INCORE1-789](https://opensource.ncsa.illinois.edu/jira/browse/INCORE1-789)

Removed
- Clean up redundant method in analysisutil [INCORE1-732](https://opensource.ncsa.illinois.edu/jira/browse/INCORE1-732)

Added
- \_\_version__ property to show pyincore version. IncoreClient will print the detected version [INCORE1-520](https://opensource.ncsa.illinois.edu/jira/browse/INCORE1-520)
- Building Functionality analysis outputs functionality samples as an additional result [INCORE1-734](https://opensource.ncsa.illinois.edu/jira/browse/INCORE1-734)
- Python method to interact with flood endpoints in hazard service [INCORE1-747](https://opensource.ncsa.illinois
.edu/jira/browse/INCORE1-747)

Changed
- Calculate multiple limit states of custom expression fragility curves [INCORE1-682](https://opensource.ncsa.illinois.edu/jira/browse/INCORE1-682)
- Updated docstrings to include all hazards that each support [INCORE1-708](https://opensource.ncsa.illinois.edu/jira/browse/INCORE1-708)

Added
- Wrapper methods for hurricane endpoints and their pytests [INCORE1-698](https://opensource.ncsa.illinois.edu/jira/browse/INCORE1-698)
- Road damage by hurricane inundation [INCORE1-697](https://opensource.ncsa.illinois.edu/jira/browse/INCORE1-697)
- Docker build and release scripts [INCORE1-709](https://opensource.ncsa.illinois.edu/jira/browse/INCORE1-709).
- Capital shocks analysis [INCORE1-691](https://opensource.ncsa.illinois.edu/jira/browse/INCORE1-691).

Changed
- Allow more input data types for MC failure probability; Add a failure state output for each sample [INCORE1-695](https://opensource.ncsa.illinois.edu/jira/browse/INCORE1-695)
- Modify input dataset for building functionality analysis [INCORE1-700](https://opensource.ncsa.illinois.edu/jira/browse/INCORE1-700)
- Updated Joplin CGE for new capital shocks output [INCORE1-718](https://opensource.ncsa.illinois.edu/jira/browse/INCORE1-718)

Added
- Added pycodestyle tests to ensure we follow PEP-8 style guide [INCORE1-650](https://opensource.ncsa.illinois.edu/jira/browse/INCORE1-650)

Fixed
- in Dataset Class from_json_str() method, set local_file_path by either from dataservices json definition, or pass
in local file path [INCORE1-662](https://opensource.ncsa.illinois.edu/jira/browse/INCORE1-662)

Changed
- Replace old analyses util methods with new methods that use DFR3 Classes [INCORE1-685](https://opensource.ncsa.illinois.edu/jira/browse/INCORE1-685)
- Refactored the following analyses to use local DFR3 classes and methods; added corresponding test folder and tests.
* Building Damage [INCORE1-644](https://opensource.ncsa.illinois.edu/jira/browse/INCORE1-644)
* Nonstructural Building Damage [INCORE1-664](https://opensource.ncsa.illinois.edu/jira/browse/INCORE1-664)
* Bridge Damage [INCORE1-652](https://opensource.ncsa.illinois.edu/jira/browse/INCORE1-652)
* EPF Damage [INCORE1-663](https://opensource.ncsa.illinois.edu/jira/browse/INCORE1-663)
* Pipeline Damage with repair rate [INCORE1-666](https://opensource.ncsa.illinois.edu/jira/browse/INCORE1-666)
* Pipeline Damage with limit states [INCORE1-665](https://opensource.ncsa.illinois.edu/jira/browse/INCORE1-665)
* Water Facility Damage [INCORE1-668](https://opensource.ncsa.illinois.edu/jira/browse/INCORE1-668)
* Tornado EPN Damage [INCORE1-667](https://opensource.ncsa.illinois.edu/jira/browse/INCORE1-667)
* Road Damage [INCORE1-680](https://opensource.ncsa.illinois.edu/jira/browse/INCORE1-680)
- Updated folder structure [INCORE1-655](https://opensource.ncsa.illinois.edu/jira/browse/INCORE1-655)
- Refactoring Tornado EPN damage format. [INCORE1-672](https://opensource.ncsa.illinois.edu/jira/browse/INCORE1-672)

Added
- Initial implementation of local dfr3 curve and mapping in pyincore [INCORE1-479](https://opensource.ncsa.illinois.edu/jira/browse/INCORE1-479)
- Implement conditional and parametric fragility calculation methods but not yet used in analyses [INCORE1-528](https://opensource.ncsa.illinois.edu/jira/browse/INCORE1-528)
- User warning message when mapping fails due to mismatched datatype [INCORE1-559](https://opensource.ncsa.illinois.edu/jira/browse/INCORE1-559)
- Methods to get uncertainty and variance for model based earthquakes [INCORE1-542](https://opensource.ncsa.illinois.edu/jira/browse/INCORE1-542)
- Added network utility that contains network dataset builder. [INCORE1-576](https://opensource.ncsa.illinois.edu/jira/browse/INCORE1-576)

Fixed
- DFR3 service will now handle empty rules better. Acceptable forms are [[]], [], [null] [INCORE1-606](https://opensource.ncsa.illinois.edu/jira/browse/INCORE1-606)

Changed
- updated documentation modules [INCORE1-617](https://opensource.ncsa.illinois.edu/jira/browse/INCORE1-617)