Pyincore

Added
- Added pycodestyle tests to ensure we follow PEP-8 style guide [INCORE1-650](https://opensource.ncsa.illinois.edu/jira/browse/INCORE1-650)

Fixed
- in Dataset Class from_json_str() method, set local_file_path by either from dataservices json definition, or pass
in local file path [INCORE1-662](https://opensource.ncsa.illinois.edu/jira/browse/INCORE1-662)

Changed
- Replace old analyses util methods with new methods that use DFR3 Classes [INCORE1-685](https://opensource.ncsa.illinois.edu/jira/browse/INCORE1-685)
- Refactored the following analyses to use local DFR3 classes and methods; added corresponding test folder and tests.
* Building Damage [INCORE1-644](https://opensource.ncsa.illinois.edu/jira/browse/INCORE1-644)
* Nonstructural Building Damage [INCORE1-664](https://opensource.ncsa.illinois.edu/jira/browse/INCORE1-664)
* Bridge Damage [INCORE1-652](https://opensource.ncsa.illinois.edu/jira/browse/INCORE1-652)
* EPF Damage [INCORE1-663](https://opensource.ncsa.illinois.edu/jira/browse/INCORE1-663)
* Pipeline Damage with repair rate [INCORE1-666](https://opensource.ncsa.illinois.edu/jira/browse/INCORE1-666)
* Pipeline Damage with limit states [INCORE1-665](https://opensource.ncsa.illinois.edu/jira/browse/INCORE1-665)
* Water Facility Damage [INCORE1-668](https://opensource.ncsa.illinois.edu/jira/browse/INCORE1-668)
* Tornado EPN Damage [INCORE1-667](https://opensource.ncsa.illinois.edu/jira/browse/INCORE1-667)
* Road Damage [INCORE1-680](https://opensource.ncsa.illinois.edu/jira/browse/INCORE1-680)
- Updated folder structure [INCORE1-655](https://opensource.ncsa.illinois.edu/jira/browse/INCORE1-655)
- Refactoring Tornado EPN damage format. [INCORE1-672](https://opensource.ncsa.illinois.edu/jira/browse/INCORE1-672)

Added
- Initial implementation of local dfr3 curve and mapping in pyincore [INCORE1-479](https://opensource.ncsa.illinois.edu/jira/browse/INCORE1-479)
- Implement conditional and parametric fragility calculation methods but not yet used in analyses [INCORE1-528](https://opensource.ncsa.illinois.edu/jira/browse/INCORE1-528)
- User warning message when mapping fails due to mismatched datatype [INCORE1-559](https://opensource.ncsa.illinois.edu/jira/browse/INCORE1-559)
- Methods to get uncertainty and variance for model based earthquakes [INCORE1-542](https://opensource.ncsa.illinois.edu/jira/browse/INCORE1-542)
- Added network utility that contains network dataset builder. [INCORE1-576](https://opensource.ncsa.illinois.edu/jira/browse/INCORE1-576)

Fixed
- DFR3 service will now handle empty rules better. Acceptable forms are [[]], [], [null] [INCORE1-606](https://opensource.ncsa.illinois.edu/jira/browse/INCORE1-606)

Changed
- updated documentation modules [INCORE1-617](https://opensource.ncsa.illinois.edu/jira/browse/INCORE1-617)

Fixed
- pandas error when accessing missing labels in the dataframe of Joplin CGE's BB matrix [INCORE1-557](https://opensource.ncsa.illinois.edu/jira/browse/INCORE1-557)
- make sure in various places that version is bumped up to 0.6.2

Fixed
- fix liquefaction calculation bug in bridge damage analysis [INCORE1-535](https://opensource.ncsa.illinois.edu/jira/browse/INCORE1-535)

Changed
- refactored EPF damage analysis to submit batch requests to get hazard values from API [INCORE1-510](https://opensource.ncsa.illinois.edu/jira/browse/INCORE1-510)
- refactored bridge damage analysis to submit batch requests to get hazard values from API [INCORE1-500](https://opensource.ncsa.illinois.edu/jira/browse/INCORE1-500)
- refactored road damage analysis to submit batch requests to get hazard values from API [INCORE1-511](https://opensource.ncsa.illinois.edu/jira/browse/INCORE1-511)
- refactoring building damage batch processing [INCORE1-522](https://opensource.ncsa.illinois.edu/jira/browse/INCORE1-522)

Added

Changed
- Refactored building damage analysis to submit batch requests to get hazard values from API [INCORE1-439](https://opensource.ncsa.illinois.edu/jira/browse/INCORE1-439)
- Moved mapping matched endpoint to pyincore side [INCORE1-474](https://opensource.ncsa.illinois.edu/jira/browse/INCORE1-474)

Fixed
- make sure only download zip from dataservice when the zipped cached file doesn't exist [INCORE1-457](https://opensource.ncsa.illinois.edu/jira/browse/INCORE1-457)
- updated failing hazard test [INCORE1-477](https://opensource.ncsa.illinois.edu/jira/browse/INCORE1-477)

Added
- move inventory dfr3 curve mapping logic to pyincore side so we can phase out /match endpoint[INCORE1-474](https://opensource.ncsa.illinois.edu/jira/browse/INCORE1-474)

- Added insecure client to test against {url}:31888 when using NCSA's network. [INCORE1-455](https://opensource.ncsa.illinois.edu/jira/browse/INCORE1-455)
- Added documentation to building functionality analysis. [INCORE-435](https://opensource.ncsa.illinois.edu/jira/browse/INCORE1-435)

Fixed

- add another layer of folder in cache folder using datasetid to differentiate
datasets with the same name [INCORE1-433](https://opensource.ncsa.illinois.edu/jira/browse/INCORE1-433)
- Fixed link in pyIncore documentation, page refs
- Fixed end of file exception caused by analysis that run in parallel by checking validity of token on client instantiation. [INCORE1-427](https://opensource.ncsa.illinois.edu/jira/browse/INCORE1-427)
- Fixed url inconsistency in dfr3 tests
- Fixed error in reading token file in windows os [INCORE-449](https://opensource.ncsa.illinois.edu/jira/browse/INCORE1-449)
- Bug in setting fragility_key in building damage[INCORE1-456](https://opensource.ncsa.illinois.edu/jira/browse/INCORE1-456)