--------------------- * Extend testing with coverage testing * Automate deployment to pypi and conda * Register project with pyup.io
---------------------
0.1.6
--------------------- * Rename to readtagger * Fix bug with stdin closing file descriptor too early, leading to corrupt BAM files * Extend testing
---------------------
0.1.5
--------------------- * Add option (-wd) to write suboptimal tag into separate BAM file * Add option (-wv) to write verified tags into separate BAM file * Performance improvments by letting sambamba handle BAM reading and writing. Also elimininate regualr expression to parse cigarstring
---------------------
0.1.4
--------------------- * Add option (-k) to keep alternative tags if they do not explain the softclipped read any better. Default is to discard them.
---------------------
0.1.3.2
--------------------- * Fix dovetailing script
---------------------
0.1.3
--------------------- * Add option to allow dovetailing in alignment files when tagging reads * Add separate entrypoint for standalone script