--------------------- Write fasta and re-align with bwa after last join_clusters Test and fix TE overlap annotation
---------------------
0.5.11
--------------------- Annotate overlaps of insertions of the same kind
---------------------
0.5.10
--------------------- Write out matching softclip cluster
---------------------
0.5.9
--------------------- Fix crash when corrected start/end can't be calculated.
---------------------
0.5.8
--------------------- Improve joining of clusters
---------------------
0.5.7
--------------------- Don't mark clusters incompatible after splitting them out from original cluster Use corrected or uncorrected start/end when finding reachable clusters Also allow joining with downstream reverse cluster Detect local maximum proper pair size