- two similarity search algorithms: BLAT for `--identity 0.85`+ and LAST for `--identity` < 0.85 - corrected error in fastq2sspace.py, so now libraries are merged based on mean insert size, not median
0.11beta
- [UNIX installer](https://github.com/lpryszcz/redundansunix-installer) and [docker image](https://github.com/lpryszcz/redundansdocker-image) - added new parameters - `--log` - `-S / --sortopt` - `-a / --linkratio` - code polished - solved minor issues
0.11a
- iterative insert size estimation refining for mate pairs - fasta2diverged.py deprecated - `-o/--output` now contains also sspace intermediate files - reduction (fasta2homozygous.py) uses LAST instead of BLAT - LAST multi-threaded (only in Python 2.7+) - cleaning-up output directory from intermediate files
0.10b
- `-l/--limit` now takes number of reads limit as fraction of homozygous genome size. To process all reads set -l to 0. - Gap2Seq is default gap closing software - BLAT is default reduction software - BWA MEM is default scaffolding software