- Predictions report formatting - Guessing read filtering plot tick marks. See [Issue 60](https://github.com/dieterich-lab/rp-bp/issues/60) for details.
Fixed
- ORF coordinates when start and stop codons fall on an exon boundary. See [Issue 64](https://github.com/dieterich-lab/rp-bp/issues/64) for more details.
1.1.5
Added
- Documentation for the analysis scripts - Documentation for creating reference indices
Fixed
- Checks that annotation files exist before beginning index creation. See [Issue 62](https://github.com/dieterich-lab/rp-bp/issues/62) - Remove unnecessary `--tmp` argument for pipeline call to `predict-translated-orfs`. See [Issue 63](https://github.com/dieterich-lab/rp-bp/issues/63) for more details.
1.1.4
Removed
- Unnecessary [analysis] package. Depending on how the package was installed, this sometimes resulted in the scripts not being found. See [Issue 56] (https://github.com/dieterich-lab/rp-bp/issues/56) for details.
1.1.3
Fixed
- Handling of Stan model paths which include spaces. See [Issue 36](https://github.com/dieterich-lab/rp-bp/issues/36) for more details. This bug was reintroduced with the commit: "UPD resolve conflicts from dev for version 1.1"
1.1.2
Fixed
- Backward-compatiblity syntax in `estimate-orf-bayes-factors`. See [Issue 51](https://github.com/dieterich-lab/rp-bp/issues/51#issuecomment-280024994) for more details.
Added
- `__version__` and `__version_info__` for `rpbp` package
1.1.1
Updated
- Documentation to use pandoc for converting markdown to html