Siibra

Latest version: v1.0a19

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1.0a19

What's Changed
* Fix boundingbox transformation by dickscheid in https://github.com/FZJ-INM1-BDA/siibra-python/pull/591
* Fix: get_region(spec) exact match if spec is a region key by AhmetNSimsek in https://github.com/FZJ-INM1-BDA/siibra-python/pull/598
* clip voi to template's to if voi lies partially outside of the template by AhmetNSimsek in https://github.com/FZJ-INM1-BDA/siibra-python/pull/606
* fix bbox planar intersection by AhmetNSimsek in https://github.com/FZJ-INM1-BDA/siibra-python/pull/609
* Use precalculated bounding boxes of image-features to speed up image feature query by AhmetNSimsek in https://github.com/FZJ-INM1-BDA/siibra-python/pull/583
* Fix nifti fetch voi by AhmetNSimsek in https://github.com/FZJ-INM1-BDA/siibra-python/pull/611
* Fix ng voi shape by AhmetNSimsek in https://github.com/FZJ-INM1-BDA/siibra-python/pull/615
* Use codecov-actionv4 and use codecov secret by AhmetNSimsek in https://github.com/FZJ-INM1-BDA/siibra-python/pull/616
* maint: unify centroid computation by AhmetNSimsek in https://github.com/FZJ-INM1-BDA/siibra-python/pull/610
* Prevent the intersection of volumes from different spaces by AhmetNSimsek in https://github.com/FZJ-INM1-BDA/siibra-python/pull/620


**Full Changelog**: https://github.com/FZJ-INM1-BDA/siibra-python/compare/v1.0a14...v1.0a19

1.0a14

**Full Changelog**: https://github.com/FZJ-INM1-BDA/siibra-python/compare/v1.0a11...v1.0a14
- Julich Brain 3.1 is now available.

1.0a11

What's Changed
* Test: add cron job to test tutorials regularly by AhmetNSimsek in https://github.com/FZJ-INM1-BDA/siibra-python/pull/585
* Use `nilearn.resample_to_img` for merging fragments by AhmetNSimsek in https://github.com/FZJ-INM1-BDA/siibra-python/pull/572
* fix: python closure is weird by xgui3783 in https://github.com/FZJ-INM1-BDA/siibra-python/pull/587
* fix: add assertion error message by xgui3783 in https://github.com/FZJ-INM1-BDA/siibra-python/pull/588
* test: fast ci if regular branch, full suite if PR to main by xgui3783 in https://github.com/FZJ-INM1-BDA/siibra-python/pull/590
* fix: memory usage when warming the cache by xgui3783 in https://github.com/FZJ-INM1-BDA/siibra-python/pull/589
* Introduce merging Neuroglancer fragments by AhmetNSimsek in https://github.com/FZJ-INM1-BDA/siibra-python/pull/561
* feat: update how related regions are fetched by xgui3783 in https://github.com/FZJ-INM1-BDA/siibra-python/pull/582
* Read freesurfer .annot files as fsaverage mesh labels by AhmetNSimsek in https://github.com/FZJ-INM1-BDA/siibra-python/pull/575
* Reformat `feature.name` and reintorudce `data` and `plot()` for `CompoundFeature`s by AhmetNSimsek in https://github.com/FZJ-INM1-BDA/siibra-python/pull/568
* Test examples as a part of e2e. Create docs on push/PR to main and on publish by AhmetNSimsek in https://github.com/FZJ-INM1-BDA/siibra-python/pull/592


**Full Changelog**: https://github.com/FZJ-INM1-BDA/siibra-python/compare/v1.0a09...v1.0a11

1.0a09

**Full Changelog**: https://github.com/FZJ-INM1-BDA/siibra-python/compare/v1.0a08...v1.0a09

- Fixed `commonns.connected_components` not masking statistical maps
- Fixed assignment of volumes to sparsemaps (which was broken due to 1fccb91b9c2c113a415a961e34d81a14cb9db042)
- Added tests to prevent regression
- Fixed minor bugs and typos

1.0a08

What's Changed
* Exclude background from connected_components by dickscheid in https://github.com/FZJ-INM1-BDA/siibra-python/pull/567
* Use Github repo connector for configurations by AhmetNSimsek in https://github.com/FZJ-INM1-BDA/siibra-python/pull/543
* Print versions in version validation and fix bug by AhmetNSimsek in https://github.com/FZJ-INM1-BDA/siibra-python/pull/570
* urls -> doi_or_url and returns a list of string by AhmetNSimsek in https://github.com/FZJ-INM1-BDA/siibra-python/pull/571
* Fix: fetch specific label from gii labels by AhmetNSimsek in https://github.com/FZJ-INM1-BDA/siibra-python/pull/574
* fix: allen gene exp query w a list of genes by AhmetNSimsek in https://github.com/FZJ-INM1-BDA/siibra-python/pull/576
* fix: pointset intersection with boundingbox fails if no points inside by dickscheid in https://github.com/FZJ-INM1-BDA/siibra-python/pull/577
* use datasets of the spaces if templates don't have any specified by AhmetNSimsek in https://github.com/FZJ-INM1-BDA/siibra-python/pull/578
* Add Volume.evaluate_points() and fix voxel access for _points_inside by dickscheid in https://github.com/FZJ-INM1-BDA/siibra-python/pull/566
* New: experimental module, with draft classes for cortical patch sampling by dickscheid in https://github.com/FZJ-INM1-BDA/siibra-python/pull/579


**Full Changelog**: https://github.com/FZJ-INM1-BDA/siibra-python/compare/v1.0a06...v1.0a08

1.0a06

What's Changed
* fix: takes long time to retrieve feature.dataset.name by xgui3783 in https://github.com/FZJ-INM1-BDA/siibra-python/pull/547
* fix: cancel previous workflows by xgui3783 in https://github.com/FZJ-INM1-BDA/siibra-python/pull/548
* Use codecov v3 by AhmetNSimsek in https://github.com/FZJ-INM1-BDA/siibra-python/pull/550
* Neuroglancer volume fetching by AhmetNSimsek in https://github.com/FZJ-INM1-BDA/siibra-python/pull/549
* Maint: `volume.fetch` by AhmetNSimsek in https://github.com/FZJ-INM1-BDA/siibra-python/pull/562
* feat: add encode URL point by xgui3783 in https://github.com/FZJ-INM1-BDA/siibra-python/pull/559
* fix: write lock for warmup by xgui3783 in https://github.com/FZJ-INM1-BDA/siibra-python/pull/563
* fix citation.CFF file

**Full Changelog**: https://github.com/FZJ-INM1-BDA/siibra-python/compare/v1.0a05...v1.0a06

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