Siibra

Latest version: v1.0a11

Safety actively analyzes 630848 Python packages for vulnerabilities to keep your Python projects secure.

Scan your dependencies

Page 5 of 14

0.4a58

What's Changed
* Remove sparseinedx url connection. Simplify factory.build_map by AhmetNSimsek in https://github.com/FZJ-INM1-BDA/siibra-python/pull/398
* Allow automatically digesting .gz files of gzipped types listed in `DECODERS` by AhmetNSimsek in https://github.com/FZJ-INM1-BDA/siibra-python/pull/401
* Allow digesting Ebrains Dataset V3 information by AhmetNSimsek in https://github.com/FZJ-INM1-BDA/siibra-python/pull/397


**Full Changelog**: https://github.com/FZJ-INM1-BDA/siibra-python/compare/v0.4a57...v0.4a58

0.4a57

**Full Changelog**: https://github.com/FZJ-INM1-BDA/siibra-python/compare/v0.4a56...v0.4a57

0.4a56

**Full Changelog**: https://github.com/FZJ-INM1-BDA/siibra-python/compare/v0.4a54...v0.4a56

0.4a54

What's Changed
* If no format is given, only try to fetch single format else fail by AhmetNSimsek in https://github.com/FZJ-INM1-BDA/siibra-python/pull/391
* test: add e2e test to ensure labelled/stat map is of expected size by xgui3783 in https://github.com/FZJ-INM1-BDA/siibra-python/pull/367


**Full Changelog**: https://github.com/FZJ-INM1-BDA/siibra-python/compare/v0.4a51...v0.4a54

0.4a51

What's Changed
* Tracer connectivity matrix by AhmetNSimsek in https://github.com/FZJ-INM1-BDA/siibra-python/pull/362
* fix: do not index proxy feature to SUBCLASSES by xgui3783 in https://github.com/FZJ-INM1-BDA/siibra-python/pull/366
* Improve sparse map handling by AhmetNSimsek in https://github.com/FZJ-INM1-BDA/siibra-python/pull/363
* Fix doc failure due to setuptools by AhmetNSimsek in https://github.com/FZJ-INM1-BDA/siibra-python/pull/375
* InstanceDataframe for maps (strictly additive, does not remove InstanceTable) by AhmetNSimsek in https://github.com/FZJ-INM1-BDA/siibra-python/pull/364
* Point assignments also have map value by AhmetNSimsek in https://github.com/FZJ-INM1-BDA/siibra-python/pull/378
* add VolumeOfInterest search in example 03_000 by AhmetNSimsek in https://github.com/FZJ-INM1-BDA/siibra-python/pull/380
* Add an examples for fetching 1um bigbrain sections by AhmetNSimsek in https://github.com/FZJ-INM1-BDA/siibra-python/pull/383
* plot_matrix works with region selection by AhmetNSimsek in https://github.com/FZJ-INM1-BDA/siibra-python/pull/382
* example 03_007 last figure layout fix by AhmetNSimsek in https://github.com/FZJ-INM1-BDA/siibra-python/pull/384
* Detect csv delimiter with Python’s builtin sniffer tool by AhmetNSimsek in https://github.com/FZJ-INM1-BDA/siibra-python/pull/381


**Full Changelog**: https://github.com/FZJ-INM1-BDA/siibra-python/compare/v0.4a47...v0.4a51

0.4a47

What's Changed
* Allow specifying a map candidate of the same kind by AhmetNSimsek in https://github.com/FZJ-INM1-BDA/siibra-python/pull/278
* Fix: dedup feature_id and feature instances by xgui3783 in https://github.com/FZJ-INM1-BDA/siibra-python/pull/288
* fix: file lock in lazy request by xgui3783 in https://github.com/FZJ-INM1-BDA/siibra-python/pull/289
* Fixes malformation of receptor density profiles due to trailing white spaces by AhmetNSimsek in https://github.com/FZJ-INM1-BDA/siibra-python/pull/287
* fix: anchor.regions.values must be anatQuant by xgui3783 in https://github.com/FZJ-INM1-BDA/siibra-python/pull/296
* feat: add feature get instance by id by xgui3783 in https://github.com/FZJ-INM1-BDA/siibra-python/pull/294
* `Map.colorize` should take kwargs to allow fetching with further specification by AhmetNSimsek in https://github.com/FZJ-INM1-BDA/siibra-python/pull/293
* Add a progressbar function with the ability to disable from logger level by AhmetNSimsek in https://github.com/FZJ-INM1-BDA/siibra-python/pull/277
* chore: fix category of ebrains datafeature (dataset -> other) by xgui3783 in https://github.com/FZJ-INM1-BDA/siibra-python/pull/298
* fix: patch __class__ in FeatureProxy by xgui3783 in https://github.com/FZJ-INM1-BDA/siibra-python/pull/299
* fix: desc and publications for atlas concepts by xgui3783 in https://github.com/FZJ-INM1-BDA/siibra-python/pull/300
* chore: update schema by xgui3783 in https://github.com/FZJ-INM1-BDA/siibra-python/pull/303
* updated name of regional connectivity by xgui3783 in https://github.com/FZJ-INM1-BDA/siibra-python/pull/304
* Implement BOLD acitivity timeseries as a new feature by AhmetNSimsek in https://github.com/FZJ-INM1-BDA/siibra-python/pull/301
* bump version by xgui3783 in https://github.com/FZJ-INM1-BDA/siibra-python/pull/305
* Update the examples for changes in the preconfigurations by AhmetNSimsek in https://github.com/FZJ-INM1-BDA/siibra-python/pull/308
* feat: parse ebrains v3 query datasetversion by xgui3783 in https://github.com/FZJ-INM1-BDA/siibra-python/pull/307
* Remove precision from int value in f-str by AhmetNSimsek in https://github.com/FZJ-INM1-BDA/siibra-python/pull/309
* fix: add datasets to feature.image by xgui3783 in https://github.com/FZJ-INM1-BDA/siibra-python/pull/311
* Feat allow local repo snapshot by xgui3783 in https://github.com/FZJ-INM1-BDA/siibra-python/pull/315
* fix: spatial props sort by volume by xgui3783 in https://github.com/FZJ-INM1-BDA/siibra-python/pull/319
* Chore: Logger.warn is depreacted, use warning instead by AhmetNSimsek in https://github.com/FZJ-INM1-BDA/siibra-python/pull/324
* Allow parsing files with varied spaces by AhmetNSimsek in https://github.com/FZJ-INM1-BDA/siibra-python/pull/321
* Chore: clean up the use of region.index property remnants after the refactoring by AhmetNSimsek in https://github.com/FZJ-INM1-BDA/siibra-python/pull/323
* Clarify the uses of `find` and `find_regions` by AhmetNSimsek in https://github.com/FZJ-INM1-BDA/siibra-python/pull/320
* add non jba conn feature to e2e test by xgui3783 in https://github.com/FZJ-INM1-BDA/siibra-python/pull/326
* Return copy with connectivity.get_matrix (and get_table) by AhmetNSimsek in https://github.com/FZJ-INM1-BDA/siibra-python/pull/345
* Add docstring to livequery by xgui3783 in https://github.com/FZJ-INM1-BDA/siibra-python/pull/337
* Do not raise a ValueError when comparing a Region to an unknown object type by ch-schiffer in https://github.com/FZJ-INM1-BDA/siibra-python/pull/343
* Clean region.find() and parcellation.get_region() up by AhmetNSimsek in https://github.com/FZJ-INM1-BDA/siibra-python/pull/331
* test: add connectivity e2e test by xgui3783 in https://github.com/FZJ-INM1-BDA/siibra-python/pull/346
* connectivity assert col_names == row_names (162) by AhmetNSimsek in https://github.com/FZJ-INM1-BDA/siibra-python/pull/347
* When map.get_region takes MapIndex as only argument, it should raise exception by AhmetNSimsek in https://github.com/FZJ-INM1-BDA/siibra-python/pull/325
* Remove overriding assigned point scores by AhmetNSimsek in https://github.com/FZJ-INM1-BDA/siibra-python/pull/351
* Preserve map shape and dtype when a map is merged by AhmetNSimsek in https://github.com/FZJ-INM1-BDA/siibra-python/pull/341
* e2e test for mergedmap shape and dtype (302) by AhmetNSimsek in https://github.com/FZJ-INM1-BDA/siibra-python/pull/353
* test: add test to sparsemap_sparse_index by xgui3783 in https://github.com/FZJ-INM1-BDA/siibra-python/pull/357
* Use unique name for the cache of sparseindices by AhmetNSimsek in https://github.com/FZJ-INM1-BDA/siibra-python/pull/356
* maint: change category of bold by xgui3783 in https://github.com/FZJ-INM1-BDA/siibra-python/pull/358

New Contributors
* ch-schiffer made their first contribution in https://github.com/FZJ-INM1-BDA/siibra-python/pull/343

**Full Changelog**: https://github.com/FZJ-INM1-BDA/siibra-python/compare/v0.4a35...v0.4a47

Page 5 of 14

© 2024 Safety CLI Cybersecurity Inc. All Rights Reserved.