Developer updates:
* build: move ORCID to metadata in pyproject.toml, fix pixi (3416)
* build: simplify Rust release (3392)
* fix: Avoid re-calculating md5sum on clone and conversion to KmerMinHashBTree (3385)
* r0.15.1 release (3304)
* update sourmash core to r0.17.0 (3381)
* Added union method to HLL (3293)
* Build: upgrade to newer maturin (3366)
* CI: use supported ubuntu for codspeed (3350)
* Fix clippy lints from 1.83 beta (3357)
* Implement resumability for revindex (3275)
* add `Manifest::intersect_manifest` to Rust core (3305)
* bump sourmash core to r0.17.2 (3399)
* change `sig_from_record` to use scaled from `Record` to downsample (3387)
* derive Hash for `HashFunctions` (3344)
* enforce a single scaled on a `CollectionSet` (3397)
* fix formatting from 3306 (3307)
* have ruff ignore ipynb so as to avoid triggering an error during CI (3325)
* improve downsampling behavior on `KmerMinHash`; fix `RevIndex::gather` bug around `scaled`. (3342)
* panic when `FSStorage::load_sig` encounters more than one `Signature` in a JSON record (3333)
* propagate error from `RocksDB::open` on bad directory (3306)
* refactor `calculate_gather_stats` to disallow repeated downsampling (3352)
* release core r0.17.1 (3388)
* release sourmash rust core r0.16.0 (3356)
* standardize on u32 for scaled, and introduce `ScaledType` (3364)
* update plugin documentation for users (3286)
* update sourmash core to r0.15.2 (3338)
* when lingroups are provided, use them for `csv_summary` (3311)
* Misc Rust updates to core (3297)
* Resolve issue for high precision MLE estimation (3296)
Dependabot and pre-commit CI updates:
* Bump DeterminateSystems/magic-nix-cache-action from 7 to 8 (3319)
* Bump DeterminateSystems/nix-installer-action from 13 to 14 (3320)
* Bump DeterminateSystems/nix-installer-action from 14 to 15 (3374)
* Bump DeterminateSystems/nix-installer-action from 15 to 16 (3401)
* Bump camino from 1.1.7 to 1.1.9 (3301)
* Bump codspeed-criterion-compat from 2.6.0 to 2.7.2 (3324)
* Bump conda-incubator/setup-miniconda from 3.0.4 to 3.1.0 (3373)
* Bump csv from 1.3.0 to 1.3.1 (3390)
* Bump getset from 0.1.2 to 0.1.3 (3328)
* Bump histogram from 0.11.0 to 0.11.1 (3377)
* Bump js-sys from 0.3.72 to 0.3.74 (3412)
* Bump memmap2 from 0.9.4 to 0.9.5 (3326)
* Bump myst-parser from 3.0.1 to 4.0.0 (3277)
* Bump needletail from 0.5.1 to 0.6.0 (3376)
* Bump pypa/cibuildwheel from 2.19.2 to 2.20.0 (3278)
* Bump pypa/cibuildwheel from 2.20.0 to 2.21.1 (3332)
* Bump pypa/cibuildwheel from 2.21.1 to 2.21.2 (3345)
* Bump pypa/cibuildwheel from 2.21.2 to 2.21.3 (3353)
* Bump pypa/cibuildwheel from 2.21.3 to 2.22.0 (3408)
* Bump roaring from 0.10.6 to 0.10.7 (3413)
* Bump serde from 1.0.204 to 1.0.207 (3289)
* Bump serde from 1.0.207 to 1.0.208 (3298)
* Bump serde from 1.0.208 to 1.0.209 (3310)
* Bump serde from 1.0.209 to 1.0.210 (3318)
* Bump serde from 1.0.210 to 1.0.214 (3368)
* Bump serde from 1.0.214 to 1.0.215 (3403)
* Bump serde_json from 1.0.120 to 1.0.121 (3267)
* Bump serde_json from 1.0.121 to 1.0.122 (3280)
* Bump serde_json from 1.0.122 to 1.0.124 (3288)
* Bump serde_json from 1.0.124 to 1.0.125 (3302)
* Bump serde_json from 1.0.125 to 1.0.127 (3309)
* Bump serde_json from 1.0.127 to 1.0.128 (3316)
* Bump serde_json from 1.0.128 to 1.0.132 (3358)
* Bump serde_json from 1.0.132 to 1.0.133 (3402)
* Bump sphinx-design from 0.5.0 to 0.6.0 (3268)
* Bump sphinx-design from 0.6.0 to 0.6.1 (3276)
* Bump tempfile from 3.10.1 to 3.11.0 (3279)
* Bump tempfile from 3.11.0 to 3.12.0 (3287)
* Bump tempfile from 3.12.0 to 3.13.0 (3340)
* Bump tempfile from 3.13.0 to 3.14.0 (3391)
* Bump thiserror from 1.0.63 to 1.0.64 (3335)
* Bump thiserror from 1.0.64 to 1.0.65 (3367)
* Bump thiserror from 1.0.65 to 1.0.68 (3379)
* Bump thiserror from 1.0.68 to 2.0.3 (3389)
* Bump web-sys from 0.3.69 to 0.3.70 (3299)
* Bump web-sys from 0.3.70 to 0.3.72 (3354)
* Bump web-sys from 0.3.72 to 0.3.74 (3411)
* Update pytest-cov requirement from <6.0,>=4 to >=4,<7.0 (3375)
* Update sphinx requirement from <8,>=6 to >=6,<9 (3269)
* Upgrade rocksdb to 0.22.0, bump MSRV to 1.66 (3383)
* [pre-commit.ci] pre-commit autoupdate (3281)
* [pre-commit.ci] pre-commit autoupdate (3290)
* [pre-commit.ci] pre-commit autoupdate (3312)
* [pre-commit.ci] pre-commit autoupdate (3330)
* [pre-commit.ci] pre-commit autoupdate (3336)
* [pre-commit.ci] pre-commit autoupdate (3341)
* [pre-commit.ci] pre-commit autoupdate (3346)
* [pre-commit.ci] pre-commit autoupdate (3360)
* [pre-commit.ci] pre-commit autoupdate (3369)
* [pre-commit.ci] pre-commit autoupdate (3380)
* [pre-commit.ci] pre-commit autoupdate (3393)
* [pre-commit.ci] pre-commit autoupdate (3404)
* [pre-commit.ci] pre-commit autoupdate (3409)
* [pre-commit.ci] pre-commit autoupdate (3414)