Spyking-circus

Latest version: v1.0.6

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0.5.6

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* Fix in the smart_search when only few spikes are found
* Fix a bug in density estimation when only few spikes are found

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0.5.5

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* Improvement in the smart_select option given various datasets
* Fix a regression for the clustering introduced in 0.5.2

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0.5.2

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* fix for the MATLAB GUI
* smart_select can now be used [experimental]
* fix for non 0: DISPLAY
* cosmetic changes in the clustering plots
* ordering of the channels in the openephys wrapper
* fix for rates in the MATLAB GUI
* artefacts can now be given in ms or in timesteps with the trig_unit parameter

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0.5rc

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* fix a bug when exporting for phy in dense mode
* compatibility with numpy 1.12
* fix a regression with artefact removal
* fix a display bug in the thresholds while previewing with a non unitary gain
* fix a bug when filtering in multi-files mode (overwrite False, various t_starts)
* fix a bug when filtering in multi-files mode (overwrite True)
* fix a bug if matlab gui (overwrite False)
* fix the gathering method, not working anymore
* smarter selection of the centroids, leading to more clusters with the smart_select option
* addition of a How to cite section, with listed publications

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0.5b9

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* switch from progressbar2 to tqdm, for speed and practical issues
* optimization of the ressources by preventing numpy to use multithreading with BLAS
* fix MPI issues appearing sometimes during the fitting procedure
* fix a bug in the preview mode for OpenEphys files
* slightly more robust handling of openephys files, thanks to Ben Acland
* remove the dependency to mpi4py channel on osx, as it was crashing
* fix a bug in circus-multi when using extensions

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0.5b8

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* fix a bug in the MATLAB GUI in the BestElec while saving
* more consistency with "both" peak detection mode. Twice more waveforms are always collect during whitening/clustering
* sparse export for phy is now available
* addition of a dir_path parameter to be compatible with new phy
* fix a bug in the meta merging GUI when only one template left

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