StORF-Extractor now can output StORFs as amino acid sequences natively and StORF-Finder/Reporter has had bugs related to short-StORFoutput fixed.
1.0.3
v1.0.3: Minor bugfix to outfile handling and fix to account for GFFs with spaces in 'source' entries.
1.0.1
This release includes a number of bug fixes, especially for file IO handling and new sub packages for managing StORFs after they have been extracted and added to a new GFF.
Thanks to elchaarn for identifying a bug in calling StORF-Reporter on multiple Bakta/Prokka GFFs.
0.7.2
Fixed some input/output filename bugs which were causing issues with finding input files or writing out of results - Added a -v option to print version and renamed verbose mode option to -verbose - Fixed the reporting of middle Con-StORF stop codons - GFF filename is now used instead of FASTA to output default outfile names - General improvements
0.7.1
0.7.0
Menu overhaul, new input/output options, new tool - StORF-Extractor to get StORF sequences from an extended genome annotation and general optimisations.