Storf-reporter

Added the UnStORFed tool to extract DNA regions without annotation or StORFs | General code cleanup | Added new menu option to include or not include the first StORF stop codon position in the GFF output - useful for when output is used by other tools which fall over with '*' at the start of sequences | Modified the locus_tag identifier to be a unique hash value computed from the output filename and StORF ID | Added option to StORF_Reporter to print out StORF sequences in fasta and not just the 'recompiled' GFF formats | Corrected UR base-1 reporting so URs starting at position 0 now start at position 1

- Two issues were identified in version 0.5.1 and fixed here:

- Fixed bug in Con-StORF Reporting
- Correctly handles 'NNN' in GFFs

Con-StORFs can now be reported by StORF-Reporter (PROKKA Run) on their own or mixed with StORFs. | Fixed a problem where Con-StORFs were not being passed to the filtering function so were technically always being removed when both StORFs and Con-StORFs were requested by user - There were additional issues with how Con-StORFs were being filtered (fixed) | Minor changes to PROKKA output for Con/StORFs | Single PROKKA directory option now outputs PROKKA .fasta with fixed StORF and Con-StORF sequences and all sequences are also now line wrapped to 60 | updated README

This is a major release which has added the ability to run StORF-Reporter on a single PROKKA directory or a set of PROKKA GFFs and produce a set of new GFFs with added StORF annotations which can then be used in downstream tools such as Rorary.

StORF-Reporter first BETA release - Matched to Pypi version: https://pypi.org/project/StORF-Reporter/ (StORF-Reporter 0.3.1)

Reworked release version numbering.