Submit-cgap

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3.0.0

=====

* Updates to use creds_utils (C4-779):

* Removed ``auth.py``, and in ``base.py`` removes:

* class ``KeyManager`` class

* decorator``UsingCGAPKeysFile``

* Changed other existing functionality to use new ``dcicutils.creds_utils`` in place of
removed functionality. (See
`SubmitCGAP PR 24 <https://github.com/dbmi-bgm/SubmitCGAP/pull/24>`_
for additional detail.)

* Added a ``make`` target named ``clear-poetry-cache``
to help with certain ``poetry`` solver problems that result from improper caching.

* Upgrades to dcicutils 6.0 (C4-896):

* Avoid use of ``full_cgap_env_name``. Just don't adjust the name.

* Avoid use of ``get_real_env_url`` by changing ``submission.resolve_server``
to not use heuristics based on it.

**NOTE:** These changes are slightly incompatible, but not materially so.
There aren't programmatic dependencies on this library, unless maybe scripts.
It will be necessary after this change to use environment names and hostnames
that are properly declard in ``~/.cgap-keys.json``.

2.0.1

=====

* Update documentation with some small fixes
* Add new basic setup documentation

2.0.0

=====

* Drop support for Python 3.6 (C4-898)

* Use ``ignored``, ``local_attrs``, and ``override_environ``
from ``dcicutils.misc_utils`` rather than ``dcicutils.qa_utils``. (C4-895)

* Add debugging instrumentation for failed access to credentials.

1.5.0

=====

* Support upload of extra files
* Update test submission FASTQ files to match update submission requirements

1.4.2

=====

* Further adustments to repair problems created by 1.4.1 (C4-818).

1.4.1

=====

* Fix SubmitCGAP file upload to work correctly under Microsoft/Windows 10 (C4-816).

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