Tapis-cli

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* Added some release notes
* Fixed residual super() calls in files and metadata mixins
* Added a basic Python/OS report to Google Analytics via tapis\_cli.et.phone\_home
* Updated TESTING with latest jobs commands
* Implemented jobs hide/unhide along with a data model for a simple Message response for when the API does not return a data object for parsing
* Updated Testing document to describe latest changes
* Added job pems management commands
* Added validation to metadata UUIDs
* Added validation of job UUIDs
* Added metadata permissions management. Added initial unit tests for all metadata commands

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* Added some more tests
* Tapis files download now allows a destination to be set. Also, sorted out behavior of downloading directories, implmenting rsync-like trailing slash behavior. Updated reporting to use 'messages' and 'bytes\_transferred' instead of 'warnings' and 'data' for clarity
* Added lines-of-code counter target to Makefile
* Begin stubbing in unit tests for each apps command, starting with validation of their description
* Updated systems commands to work w Python2 and leverage the improved inheritance mechanism
* Added note about Python2 support to TESTING.md
* Updated apps pems \* commands for Python2 and adopted new inheritance scheme
* Moved to Python2/3 super() syntax
* Replaced ; comment char with since Python2 version of setuptools does not seem to recognize the former
* Replaced calls to os.makedirs with the Python2/3 compatible tapis\_cli.utilsmakedirs
* Reactivated 'profiles search'. Made 'profiles show <user>' expect a username not a general identifier. Updated all commands for Python2 and to use new inheritance scheme
* Updated metadata commands for Python2 and improved inheritance
* Implemented Python2 versions of jobs outputs list|download. This includes a backport of Path from Python3 via the pathlib2 package
* Updated files pems commands to use new inheritance scheme
* Ported file management commands to use new inheritance scheme
* Refactored jobs commands (save for outputs \*) to make better use of inheritance
* Revised apps commands to make better use of inheritance
* Linting
* Changed take\_action\_defaults to update\_payload to clarify its role in the command processing workflow
* Renamed SearchableCommand.headers to render\_headers to clarify its role in the command processing workflow
* Renamed before\_take\_action to preprocess\_args to clarify what the function actually does
* Removed note about needing to support Python2 since the print\_stderr function now works as intended on that platform
* Reworked taccapis.v2 clients to use Python2-style super() calls
* Reworked apim commands to use commands.taccapis.formatter base classes
* Moved TaccApisCommandBase and kids to commands.taccapis.formatters, adding SearchableCommand as a parent class. This simplifies use of the headers function that translates a command's model into parameters and headers
* Added longrun decorator since we don't need to validate the cache speedup every single time we run tests
* Migrated seconds, msec, usec, nsec functions to use arrow, thus avoiding Python2's lack of datetime.datetime.timestamp
* Added support for second virtualenv and the config file for unit test credentials
* Stubbed in test files for other submodules
* Unit tests showing that both serializers can work with the backported lru\_cache, at least in a trivial case
* Added test to validate Python2 and 3 behavior of TaccApiDirectClient.build\_url
* Added some helpful fixtures for building unit tests
* Revert from using \*args inside build\_url for Python2 compatibility. Need to add a unit test
* Added a Python2-compatible version of lru\_cache. Still needs to be functionally tested
* Fixed majority of Python2/Python3 import path incompatibilities. Added unit tests to validate import paths for all command submodules
* Fixed Python2 failure with print\_stderr
* Removed deprecated settings names and use of the ENV\_PREFIX

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* Updated TESTING docs
* Refactored dotenv loading into a submodule
* Settings properties now map to env variable names directly. Tested most core functions and they work OK after the update
* Updated TESTING doc
* Deactivated unused settings. Reworked seetings to honor AgavePy's default tenant ID setting
* Updated UploadJsonFile mixin to be able to read from STDIN. This fixes 199 for all cases where a JSON upload is supported
* Completed implementation of metadata update and updated TESTING docs with examples of all metadata CRUD operations
* Suport for metadata create, delete
* Small refactor to introduce a MetadataIdentifier mixin and to allow the ServiceIdentifier class and its subs to have a validate\_identifier() method
* Implemented files mkdir. Closes 108
* Closes 204
* Fix var name typo in \_local\_temp\_filename
* Added curlify
* Update requirements.txt
* Updated TESTING to reflect files pems command status
* Refactored files pems commands to use a shared pems\_list helper which in turn fixes an issue with the files service returning a spurious result
* WIP files pems (drop, grant, revoke)
* Working versions of files pems list and files pems show
* Changed display value for Permissions to TRue/False instead of X and ''
* Refactord apps pems commands to use new Permission model instead of AppPermission
* Refactored taccapis.model into a submodule
* Username mixin added
* Stubbed in additional metadata commands
* Added Zenodo badge

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* Updated TESTING doc
* Mailmap
* Jobs Outputs Download command now supports include and exclude wildcards
* Badges. Install instrux
* Sample config file now illustrates relation between TAPIS\_CLI\_SHOW\_CURL and TAPIS\_PY\_SHOW\_CURL
* TAPIS\_CLI\_SHOW\_CURL now defaults to the current value of TAPIS\_PY\_SHOW\_CURL
* Accept eho-tacc PR to add include support to jobs outputs download
* Updated env variable to reflect value defined in AgavePy
* Updated TESTING doc with details on new curl command function
* Formatting
* WIP: All command using TaccApiDirectClient can now render a curl equivalent to STDERR when TAPIS\_CLI\_SHOW\_CURL is set to true. Making this work for AgavePy will require implementing the same functionality in agavepy.swaggerpy"
* Attempt automatic container image build
* Disable Travis builds that are breaking due to Travis platform issues
* Updated ExcludeFiles and IncludeFiles argument builders to allow params to be specified multiple times insted of specifying a list. This makes the position of the --include and --exclude options agnostic to position when more than more pattern is specified
* WIP to get date searches working for metadata. for now, disabled search on 'created' and 'lastUpdated' fields
* WIP on metadata search by date
* Added details about new/fixed search options in apps, jobs, systems
* Improve support for --include flag
* Date searches for jobs plus general quality improvements for all search params
* Boolean searches work now. Available search modifiers now shown in help
* Updated TESTING with new info on impersonation tokens
* Disabled passing API server via CLI
* TaccApisBearer now honors a custom access token when passed
* Added support for colored text as set of utils function
* tokens create can now issue an impersonation token, but the other commands don't all honor the -z option
* Add --include option
* Prepend destination dir to exclude file paths
* Updated TESTING
* Working version of files-history
* files dete command
* Updated TESTING
* Implemeted files delete
* Fixed import path
* Updated contents of TESTING document
* Throw Exceptions when a placeholder option is passed
* WIP: tapis files upload is ready to test
* Rename 'data' to 'rows' in FilesOptionssort\_table
* Small refactor to let Files\* commands use a series of mixins to set their arguments. Changed the metavar for --api-server, --token, --limit, and --offset to reflect their types Made --sort-size and --sort-time mutually exclusive in FilesOptions mixin
* files download now reports total data downloaded
* More details on files download command
* Updated testing doc with latest on jobs-outputs and files functionality
* Working implementation of 'jobs outputs download'
* Extended Tapis Direct client to be able to get raw bytes
* WIP jobs outputs download - help view works
* Working implementation of jobs-output-list
* Hide system since it's implicit
* Make specifying a value optional for FilePath mixin
* Minimal port of files.helpers to jobs. Very un-DRY
* Added support for sync mode and an excludes parameter to 'files download'
* WIP files download command
* Added wrapper for print-reporting to STDERR
* Implemented recursive download with support for atomic operations
* Rebuilt helpers.\_walk to return entire record, which allows downstream formatting and other actions on the walked result
* Lifted over some code from bacanora to implement list, walk, and various stat functions
* Formatting
* Added tenacity depedency. Brought in hashable from bacanora library as 'hashcache' to provide LRU caching of complex or custom objects
* Minimal implementation of 'files show' and 'files list'
* Lifted in from a branch
* Added note in README about expired clients failing to be re-initialized by 'tapis auth init'
* Update requirements.txt
* Fixed typo in install instructions. Thanks \wonaya
* Move Docker build into deployment script. Fixed setup.cfg comments that broke in Py2.7 versions of setuptools
* WIP: TravisCI build/push Docker image
* Updated README to fix links
* Updated README
* Cleaned up README typos
* silence 'fatal not a git repo' message when not working in a git repo
* Removed warning about missing auth subsystem from README
* Updated w details on profiles commands
* Added image release target
* Finishing touches on Docker image
* Additional final prep for testing
* Fixed import paths in Gitlab
* Updated docs
* Removed deprecated services.orig directory
* Added Tox support
* Getting tox to work and a Docker image to build
* WIP: Build working Docker image
* Automated AUTHORS and ChangeLog from setuptools and pbr
* Working version of 'tapis auth init' and 'tapis auth show'. Fixed 'tapis auth tokens create' to use utilsprompt() for password
* Added some utils to help with client generation and auth init workflow
* Moved before\_take\_action into ParserExtender then implemented verbose->json behavior in JsonVerbose using super()
* Jobs-show can now emit a submittable JSON doc. Clients create can now prompt for a password. Small refactor of TapisModel and its subs to de-duplicate code
* Stubbed in auth commands
* YAPF
* Working token create and refresh (tho the class setups are bit funky)
* Yapf formatting
* Enabled metadata list, show, search after refactor
* Updated setup to include all systems commands
* Refactor systems-\* commands to use new TapisEntity and SearchableCommand APIs. Added all role management commands
* Fixes to some base classes re: inheritance behavior
* A few fixes to apps commands uncovered while implementing systems and jobs commands
* Refactored jobs commands to use new TapisEntity and formatter APIs. Added resubmit
* Refactored systems commands to use new TapisEntity and formatter APIs
* Refactored Jobs\* commands. Implemented jobs-submit, jobs-resubmit
* Refactor Jobs classes and formatters to use new TapisEntity API
* Activated various apps commands
* Closes 15
* Closes 12
* Closes 161
* Closes 10
* Closes 160
* Closes 159
* Implemented app pems drop (but disabled as the API call is broken)
* Rebuilt apps.formatters and implemeted updated apps.models
* Completed refactor of TapisEntity and SearchableCommand to support various apps use cases
* Refactored Command classes, Mix-Ins, and API client base classes
* Enable loading Agave client from local cache, with overrides allowed via parsed args
* Added "sessions token refresh" to update current access token
* Added new TaccApis base class TaccApisWithRefreshFormatOne which includes a --refresh-token option in the command
* Now including the actual Tapis classes
* Refactored commands.taccapis.v2.<command>.formatters
* Fixed name of JSON field defining public apps and now search works
* Commented settingsall\_settings()
* Implemented the 'settings list' command
* Added example show command and usage of -v to get JSON response
* Example apps search result
* Added warning about auth subsystem
* Updated home-page field in setup.cfg to point at TACC-Cloud version of the repository
* Added warning about auth subsystem
* Groundwork for Gitlab
* Refactored commands to use tapis\_cli.clients.services.mixins classes
* Moved common Command mixins to their own module
* Removed redundant setting of id\_display\_name
* Changed to correct API name for metadata
* Implemented profiles-search and profiles-list
* Closes 125 Closes 150
* Implemented metadata-list save for its query for associationIds. Closes 91, 92, and 87
* Stubbed in more commands
* Ran yapf
* Implemented systems-publish and systems-unpublish
* Implemented systems-enable and systems-disable
* Added systems-create and systems-update
* Added test data for apps create/update
* Refactor to implement JSON uploads, requirement for a service identifier, and automatic expansion to JSON in verbose mode using multiple inheritance
* Added actors init

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* Updated docs. Still erroring tho
* Documented more modules and packages
* Stubbed in additional command definitions
* Moved government perpetual license to a NOTICE file so the license is unpolluted
* Added full complement of command stubs
* Added a check to avoid creating closed issues of identical title
* Apps enable, disable, history commands
* Added a utility script to populate Github with new commands as they are defined in setup.cfg
* Added a utility script to populate Github with new commands as they are defined in setup.cfg
* Added helper to quickly return all active entrypoints
* Revised how app-level verbosity is detected at formatting time, making it a property of the formatter
* Added 'id' field to systems history model
* Implemented apps-history
* Example simple management action
* Stubbed in subpackages for each service's models
* Updated to reflect latest implemented command set
* Laid groundwork for files APIs with some model work
* Refactored to use a models subpackage. Added jobs-history and jobs-pems-list commands
* Refactored to use a models subpackage
* Refactored systems to use a models subpackage. Implemented systems-queues-list, systems-history, systems-roles-list commands
* Added jobs-history
* Default to using --fit-width
* Merged in systems
* Added systems status for consistency w job status. Returns brief form of one record
* Added import for JobsStatus
* jobs-status
* Improved command help string
* Working instance of jobs list, search, show
* Fixed help test for systems commands
* Added systems list, search, show
* Debugging why humanize is not working in list/search table views
* Reformatted
* The apps search, list, and show functions are largely done
* WIP
* WIP
* Commented placeholders for other commands in setup.cfg
* Just like that. Stubbed in vocabulary currently used by the tacclab CLI
* Make BSD 3-Clause recognizable by Github's parser
* Updated command module help strings to reflect their scope and service versions in a consistent fashion
* Updated command module help strings to reflect their scope and service versions in a consistent fashion
* Client-side commands moved to commands directory
* Regenerated Python API docs to reflect commands structure and updates to settings
* Implemented commands directory organization
* Reformatted commmands module with yapf
* Added namespaced Tapis CLI variables
* Move back to command names that map to service names
* Break out types of HTTP Clients
* Enabled Python API documentaion to build as well
* Moved cliff autodocs to their own doc page
* Stubbed in mocks for sessions, apps, jobs
* Try build again
* Generate docs/requirements.txt
* Back out dynamic title, authors, etc from docs/config.py
* Changed module import path
* RTFD
* Standalone docs/requirements file
* Add back docs
* Sphinx support
* Added yapf section to setup.cfg
* YAPF support
* Updated README some more
* Updated README some more

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* Improved README w getting started details
* Refactored to use metadata in setup.cfg
* Does not use metadata 2.0 standard and thus pbr and setuptools cannot build a CLI. This is a commit of work before trying a refactor to resolve the issue
* Demo unit tests
* Define application skeleton