Taxmyphage

Updates to the code to correctly read the ICTV VMR_40 release , which has minor changes to column titles, compared to previous versions.

Also includes updated databases built on all dsDNA genomes from VMR_40 to reflect all new families, genera, species

Updates to the code to correctly read the ICTV VMR_40 release , which has minor changes to column titles, compared to previous versions.

Also includes updated databases built on all dsDNA genomes from VMR_40 to reflect all new families, genera, species

Changed so precomputed blast matrix is used for existing genomes, by default

All data can be re-computed by using :

--no-precomputed Don't use the precomputed blastn matrix

**Bug fix:** Updated code to recognise the correct sheet in the VMR record now sheet 1 not 0.

Automatically looks for a sheet naming containing "VMR" rather than the new index sheet in the VMR file provided by ICTV

**Full Changelog**: https://github.com/amillard/tax_myPHAGE/compare/0.3.2...0.3.3

**Update**:
- Speed increase by pre-calculation of similarity for all currently classified phages. Only similarity against the query genome have to be now computed. Option to use pre-calculated data or calculate all from scratch is available.

**Full Changelog**: https://github.com/amillard/tax_myPHAGE/compare/0.3.1...0.3.2

Bug:
- Modification of the blast command in case the similarity module is used. It will sort the blast results first in case similar sequences are in the input file and the reference (that would be the case if reference is not used as the input file will be the reference in that case)

**Full Changelog**: https://github.com/amillard/tax_myPHAGE/compare/0.3.0...0.3.1