Tedana

Release Notes

Major changes: This release reverts to the 2.5 version selection criteria, and it also switches the ICA implementation from `mdp` to `sklearn`. It is also includes a major overhaul of the documentation.

With thanks to frodeaa, RupeshGoud, and jbteves for contributrions !

Changes

* [DOC] Rearrange badges in README (118) tsalo
* [ENH] Linting, update imports (4) emdupre
* [FIX] Add quiet and debug options to t2smap (123) emdupre
* [DOC] Add Python version info (126) tsalo
* [FIX] Accept non-NIFTI files without complaining (128) rmarkello
* [FIX] Remove nifti requirement in `selcomps()` (130) rmarkello
* Inital commit of tedana package (1) emdupre
* [DOC] Update multi-echo.rst (138) RupeshGoud
* [FIX] Logging in tedana and t2smap (143) frodeaa
* [ENH] Track PCA and ICA component selection decisions (122) tsalo
* [DOC] Improve documentation for pipeline (133) tsalo
* Documentation update for installation and environments in miniconda (142) jbteves
* [DOC] Add Support page (150) tsalo
* [ENH] Rename modules (136) frodeaa
* [DOC] Update documentation for interacting with other pipelines (134) emdupre
* Merge in rmarkello PR (19) emdupre
* [TST] Support Python 3.5 (154) tsalo
* [DOC] Request for Comments: Roadmap and Contributing (151) emdupre
* [ENH] update ICA to sklearn from mdp (44) emdupre
* [DOC] RST formatting fixes for roadmap, contributing (157) emdupre
* [ENH] Switch to Selcomps 2.5 (119) emdupre
* [FIX] Loop through volumes in FIT method (158) tsalo

Release Notes

Update licensing for zenodo integration

Changes

* [FIX] Update license and license fields (117)

Release Notes

To patch for the zenodo release

Changes

* [FIX] Lint zenodo.json (116)

Release Notes

With thanks to chrisfilo and oesteban for suggestions !

Changes

* [FIX] add extensions in fnames for filewrite (92)
* [ENH, FIX] Add wavelet denoising and fix t2smap workflow (90)
* [DOC] Better commenting for component selection algorithm in selcomps (91)
* [DOC, REF] Add files generated to function docstrings (94)
* [FIX] Remove hardcoded numbers of echoes. (95)
* [DOC] Add resources to RTD site (99)
* [REF] Merge CLI into workflows (100)
* [TST] Update testing environment (103)
* [DOC] Update docstring for fixed_seed to ref None option (104)
* [ENH] Add mask argument to t2smap, tedana (108)
* [DOC, REF] Refactor select_comps and add shape checks to several functions (105)
* [DOC] Streamline release process, add checklist to RTD (109)
* [FIX] Drop gifti support (114)
* [FIX] Explicitly strip extensions (115)

Release Notes

Release including hot fix for JSON serialize error.

Changes

[FIX] Hot fix for JSON serialize error

Release Notes

This release improves documentation and handling of individually supplied echos.

Changes

[FIX] Add fname to TED dirname
[FIX] Improve gii file handling
[FIX] Fixes path handling and reference image errors
[DOC] Add discussion of gitter room
[DOC] Remove docker reference in contributing
[DOC] Remove installation RTD