Tiledb

Build system changes

* Override tag version in manylinux container by dudoslav in https://github.com/TileDB-Inc/TileDB-Py/pull/2077

Improvements

* Move vacuum to pure Python by kounelisagis in https://github.com/TileDB-Inc/TileDB-Py/pull/2067
* Make dump calls conditional by kounelisagis in https://github.com/TileDB-Inc/TileDB-Py/pull/2062

Build system changes

* Bump libtiledb version to 2.26.0 for daily tests by kounelisagis in https://github.com/TileDB-Inc/TileDB-Py/pull/2063

Improvements

* Replace dump() calls with operator<< by kounelisagis in https://github.com/TileDB-Inc/TileDB-Py/pull/1975
* Convert config values to strings in VFS init by gspowley and kounelisagis in https://github.com/TileDB-Inc/TileDB-Py/pull/2060
* Move DomainIndexer, Stats, and Array helper functions from Cython to pybind by kounelisagis in https://github.com/TileDB-Inc/TileDB-Py/pull/2057
* Refactor Aggregation from Cython to Pure Python by kounelisagis in https://github.com/TileDB-Inc/TileDB-Py/pull/2056
* Move tiledb_object_* API calls from Cython to pybind by kounelisagis in https://github.com/TileDB-Inc/TileDB-Py/pull/2049
* Don't check dtype if column_types is not set - from_pandas by kounelisagis in https://github.com/TileDB-Inc/TileDB-Py/pull/2055
* Fix serialization test and add command line option by kounelisagis in https://github.com/TileDB-Inc/TileDB-Py/pull/2052
* Remove deprecations by kounelisagis in https://github.com/TileDB-Inc/TileDB-Py/pull/2050
* Make from_pandas respect column_types for index dimensions by kounelisagis in https://github.com/TileDB-Inc/TileDB-Py/pull/2046
* Remove Dask test skips and add Dask as a test dependency by kounelisagis in https://github.com/TileDB-Inc/TileDB-Py/pull/2047
* Fix exception when calling label_index on a Query object by sric0880 and kounelisagis in https://github.com/TileDB-Inc/TileDB-Py/pull/2044
* Improve Query Condition error messages to align with TileDB-SOMA-Py by kounelisagis in https://github.com/TileDB-Inc/TileDB-Py/pull/2041
* Fix numpy.ma.fix_invalid issue in NumPy 2.1.0 by replacing with numpy.ma.masked_invalid by kounelisagis in https://github.com/TileDB-Inc/TileDB-Py/pull/2042
* Add scope_ctx to doc build by spencerseale in https://github.com/TileDB-Inc/TileDB-Py/pull/2038
* Passing Empty List to multirange_index and df should return Empty Results by nguyenv and kounelisagis in https://github.com/TileDB-Inc/TileDB-Py/pull/1412
* Get rid all BNF lines in QueryCondition docstring by kounelisagis in https://github.com/TileDB-Inc/TileDB-Py/pull/2028
* Add tiledb_current_domain_t as type by kounelisagis in https://github.com/TileDB-Inc/TileDB-Py/pull/2033
* Add Enumeration in api ref docs by kounelisagis in https://github.com/TileDB-Inc/TileDB-Py/pull/2026
* Hide sensitive params shown in Config::__repr__ by kounelisagis in https://github.com/TileDB-Inc/TileDB-Py/pull/2029
* Wrap current domain API by kounelisagis in https://github.com/TileDB-Inc/TileDB-Py/pull/2015

Build system changes

* Bump libtiledb and numpy versions for daily tests / make CurrentDomain and NDRectangle code conditional by kounelisagis in https://github.com/TileDB-Inc/TileDB-Py/pull/2036
* Fix compilation warnings by kounelisagis in https://github.com/TileDB-Inc/TileDB-Py/pull/1940
* Add packaging as dependency by dudoslav in https://github.com/TileDB-Inc/TileDB-Py/pull/2032
* Expose setup.py flag to enable deprecations by kounelisagis in https://github.com/TileDB-Inc/TileDB-Py/pull/2025
* Update Cython minimum version to 3 by kounelisagis in https://github.com/TileDB-Inc/TileDB-Py/pull/2027

Improvements

* Remove deprecated Array.delete_fragments code path by teo-tsirpanis and kounelisagis in https://github.com/TileDB-Inc/TileDB-Py/pull/2009
* Fix a typo in an error message by johnkerl in https://github.com/TileDB-Inc/TileDB-Py/pull/2004
* Support ctx argument in array_exists by kounelisagis in https://github.com/TileDB-Inc/TileDB-Py/pull/2003
* Move fragment list consolidation API to pybind by kounelisagis in https://github.com/TileDB-Inc/TileDB-Py/pull/1999

Build system changes

* Add version pins for pandas 3.0 by kounelisagis https://github.com/TileDB-Inc/TileDB-Py/pull/2016
* Scikit-build-core build system rework by dudoslav and ihnorton in https://github.com/TileDB-Inc/TileDB-Py/pull/1988
* Patches for the build system by dudoslav, ihnorton and kounelisagis in https://github.com/TileDB-Inc/TileDB-Py/pull/2010, https://github.com/TileDB-Inc/TileDB-Py/pull/2011, https://github.com/TileDB-Inc/TileDB-Py/pull/2013, https://github.com/TileDB-Inc/TileDB-Py/pull/2014, https://github.com/TileDB-Inc/TileDB-Py/pull/2018, https://github.com/TileDB-Inc/TileDB-Py/pull/2019, https://github.com/TileDB-Inc/TileDB-Py/pull/2020

Defects removed

* Fix serialization issue with schema evolution for query v3. [5154](https://github.com/TileDB-Inc/TileDB/pull/5154)

Improvements

* Document Azure, GCS and local support for VFS.ls_recursive by kounelisagis in https://github.com/TileDB-Inc/TileDB-Py/pull/1980
* Skip Dask failing test on Windows by kounelisagis in https://github.com/TileDB-Inc/TileDB-Py/pull/1995