Tobias

- Fix for error reading .meme-motifs with scientific notation (e.g. 1e-05)

- Fix for color keyerror in BINDetect (volcano plotting)
- Fixed bug in BINDetect normalization leading to NA's in normalized values (and exit due to error). Fix now applies a robust sigmoid detection of norm factors per condition. NOTE: This introduces small changes in normalized values in comparison to versions 0.12+

- Fix of windows /r line-end in "cluster_sites_by_overlap.py"

- Fix to BINDetect bug occurring in case of duplicates in --motif input. Motifs are now given unique names if duplicated.
- Change of "Transcription factor similarities" to "Transcription factor distance" in BINDetect.
- Added utility script "cluster_sites_by_overlap.py" to create a BINDetect-style dendrogram for overlapping .bed-file regions

- Fixed bug in quantile normalization (from 0.12.0) leading to spurious normalization factors at high footprint values

- Improvement of internal OneMotif/MotifList class structure for reading/writing/scanning
- Added '--output-peaks' to BINDetect to enable output of a subset of '--peak' regions
- Added '--output-txt' and calculation of agg-differences to PlotAggregate
- Improved robustness of quantile normalization between conditions in BINDetect
- Fixed Nonetype error for peaks in ATACorrect
- Improved debug with added name of bigwig to bigwig reading error in BINDetect, ScoreBed and PlotAggregate
- Bugfixes to CreateNetwork for mismatches between --TFBS/--origin