Allotropy

Fixed

- Thermo Fisher Scientific Qubit Flex - add fields that were accidentally removed/renamed in refactor (711)

Added

- Revvity Kaleido - add v3.5 to supported software versions (707)
- Solution Analyzer - add solution-analyzer/REC/2024/09 (706)
- AppBio QuantStudio RT-PCR - support skipping wells that have no results in the raw data file, indicating an omitted well (689)
- AppBio QuantStudio RT-PCR - add "quantity" calculated data documents for non-STANDARD wells (698)
- Plate Reader - update adapters using plate-reader/2024/06 schema to include ASM file identifier (695)
- Thermo Fisher Scientific NanoDrop 8000 & Thermo Fisher Scientific NanoDrop Eight - support alternative reporting format for absorbance measurements (688)
- Agilent Gen5 - add support for error documents in the (694)
- Electrophoresis - add the electrophoresis/REC/2024/06 schema (693)
- MSD Methodical Mind - update to use plate-reader/REC/2024/06 schema (692)
- Agilent Gen5 Image - add support for no result sections file examples (679)
- Thermo Fisher Scientific SkanIt - initial implementation (658)
- Perkin Elmer Envision - update to use plate-reader/REC/2024/06 schema (686)
- BMG Mars - update to use plate-reader/REC/2024/06 schema (685)
- Spectrophotometry - add spectrophotometry/REC/2024/06 schema (684)
- Thermo Fisher Scientific Nanodrop Eight - initial implementation (683)
- Unchained Labs Lunatic - add additional metadata from header block (680)

Fixed

- Molecular Devices SoftMax Pro - raise error for unsupported Group data format (696)
- Agilent Gen5 - raise error when there are calculated data but no measurements in results (691)
- Beckman Vi-Cell BLU - filter NaN values when reading cell counts (687)
- Global - update DataSeries to use float parsing utility when reading a float value, in order to better handle edge cases (682)

Changed

- Thermo Fisher Scientific Qubit Flex - refactor parser to use schema mapper design pattern (699)
- Global - change the way custom information is organized in schema mappers and ASM outputs to be consistent with future expectations of ASM (673)
- Thermo Fisher Scientific NanoDrop 8000 & Nanodrop Eight - rebrand NanoDrop Eight parser to NanoDrop 8000 (652)

Added

- AppBio Quantstuido Design & Analysis - add Amp score and Cq confidence calculated data documents (670)
- Molecular Devices SoftMax Pro - add support for kinetic measurements files (674)
- Revvity Matrix - initial implementation (656)

Fixed

- AppBio Quantstuido Design & Analysis - fix Y-intercept and Slope references as data sources for quantity calculated data document (670)

Added

- AppBio Quantstuido - add cache decorator to amp score calculated data construction (666)
- ChemoMetec NC View - initial implementation (665)

Fixed

- qPRC & AppBio QuantStudio Design & Analysis - make "PCR Detection Chemistry" optional and omit when missing instead of using N/A (668)
- Perkin Elmer Envision - remove leading '0' from well identifier numbers (671)

Added

- AppBio Quantstuido - add additional metadata fields (661)

Fixed

- Unchained Labs Lunatic - handle missing 'Sample name' and missing 'Table' label before table parser (660)
- Agilent Gen5 - cast measurement label to string, since it can numeric when reading directly from dataframe (e.g. a single wavelength) (657)

Changed

- Appbio QuantStudio Design & Analysis - simplify sheets needed to infer presence/absence experiment type inference (659)
- Appbio QuantStudio Design & Analysis - allow software name and version to be None (659)

Added

- AppBio QuantStudio RT-PCR - add Amp score and Cq conf calculated documents (670)
- AppBio QuantStudio RT-PCR - add custom information to processed data document (645)
- Plate Reader - add schema mapper for plate-reader/REC/2024/06 schema (642)
- AppBio QuantStudio RT-PCR - add checks for missing well item amplification and results data in quantstudio (643)
- Thermo Fisher Scientific Nanodrop One - add support for CSV files (649)
- Thermo Fisher Scientific SkanIt - initial implementation (658)
- Agilent Gen5 - add support for label format "[excitation wavelength], [emission wavelength]" for fluorescence point detection (650)

Fixed

- AppBio QuantStudio RT-PCR - fix bad reference for y-intercept and slope in quantity calculated data document (670)
- Molecular Devices SoftMax Pro - correctly format timezone (642)

Changed

- Molecular Devices SoftMax Pro - refactor to use the schema mapper (642)
- Agilent Gen5 - update to use plate-reader/REC/2024/06 schema (633)
- Thermo Fisher Scientific Genesys30 - update release state to RECOMMENDED (654)