Allotropy

Added

- MSD Methodical Mind - initial implementation

Fixed

- AppBio QuantStudio Design & Analysis - fix missing genotyping determination result
- Revvity Kaleido - remove empty space at beginning of sample identifier

Changed

- Internal - use modular paths for schema models

Fixed

- Internal - fix path_util to work outside of allotropy correctly

Added

- Internal - add schema_parser/path_util.py to remove dependency: converter.py -> generate_schemas.py, which pulled script dependencies into allotropy

Added

- Internal - add script to create graph visualization of calculated data documents from asm json files
- Agilent Gen5 - initial implementation
- CTL ImmunoSpot - initial implementation

Fixed

- Cell Counting - fix missing required field in cell-counting/BENCHLING/2023/11 schema
- Plate Reader - fix missing required field in plate-reader/BENCHLING/2023/09 schema

Changed
- Internal - upgraded allotropy python requirement to python 10
- Internal - updated ASM model class typing to use | union
- AppBio QuantStudio RT-PCR - implement default value for sample role names
- Internal - add kw_only=True for generated schema models

Added

- Global - add definition of calculated data documents representation
- Bio-Rad Bio-Plex Manager - update to use _get_date_time
- MSD Methodical Mind - refactor to use structure pattern

Fixed

- AppBio QuantStudio Design & Analysis - remove duplicated ct sd and ct se calculated data documents
- AppBio QuantStudio RT-PCR - Remove duplicated quantity mean calculated data documents from

Changed

- Multi Analyte Profiling - update minimum_assay_bead_count to be of type "number" instead of "unitless"
- Bio-Rad Bio-Plex Manager & Luminex xPONENT - update to use multi-analyte-profiling/BENCHLING/2024/01 schema (394)
- AppBio QuantStudio RT-PCR - remove inner calculated data documents
- AppBio Quantstudio & AppBio QuantStudio Design & Analysis - use global definition of calculated data documents

Added

- Global - add Vendor display names
- Liquid Chromatography - add liquid-chromatography/REC/2023/09 schema

Changed

- Internal - improve schema model generation script to handle more complicated schemas

Removed

- Internal - remove assert in validate_contents