* Added two new tools to the benchmarks: * fastp * Cutadapt * Updated versions of several tools used in the paper. Rebuilt containers and pushed them to Dockerhub. * Fix 64: InsertAligner not respecting match_adapter_wildcards and match_read_wildcards options.
1.1.17
* Fix 51: Reads of different lengths not error corrected.
1.1.16
* Fix for 57: LegacyReport stops on adapter with no trimmed reads, and LegacyReport errors when histogram data is None. Thanks to cokelaer and pyMyt1! * Fix for 58: NextSeqTrimmer not trimming from both ends. Thanks to pkMyt1!
1.1.15
* Fix for 41: Error when using progress bar. * Fix for 42: Discordance between Cutadapt and Atropos in number of expected events. * Added '--alphabet' option. Set to 'dna' to validate input sequences against the allowed DNA characters (A/C/G/T/N). This fixes 43 and partially fixes 44. * Fixed 44: Uncaught errors not being logged.
1.1.14
* Fix for 39: miRNA option error (thanks to mottodora) * Fix for 37: fixes overflow error when computing RandomMatchProbability on long reads (>150 bp)
1.1.13
* Fix for 38: Atropos fails with MultiCore error when using OrderPreservingWriterResultsHandler (thanks to cshenanigans)