This release provides support for uploading compressed files for sequence queries or genome submissions. Sequence files can be in either uncompressed, or gzip/zip compressed FASTA format.
1.29.3
This version:
* adds the option to include sequence bin size and the number of contigs within an isolate query. * improves database connection handling to try to minimise the number of open connections. * adds the option for a curator to deny a user's request to publish private data records and automatically notifies users of their request outcome.
1.29.2
This version sees an upgraded rMLST species id plugin. This is now multi-threaded and works much quicker. In addition to scanning genomes in a local database, it also allows the use of pre-tagged rMLST allele designations which is even quicker.
1.29.1
* Isolate fields can be either required, optional and now 'expected'. Expected fields require a submitter to explicitly state if there is no value available by entering 'null'. For use when you want a submitter to always include a value for a field but it is not always possible. * Fix for tooltip positioning in GenePresence heatmap.
1.29.0
* Provides curators with site-wide accounts options to modify how they receive submission notifications. * Digest mode - E-mail notifications are grouped and sent as a single notification at minimum intervals set by the user. Minimum interval times can be set between 1 and 24 hours. * Holiday mode - Curators can mark themselves absent for a period of up to 3 months where they will no longer receive notifications.
1.28.1
* Update to the ITOL plugin to support the use of an API key which is now necessary due to a change at https://itol.embl.de/ to a subscription model. * If a new allele is found during a sequence query, the allele sequence is now extracted with the option to start a new submission for assignment.