Biomero

Latest version: v1.14.0

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1.10.0

* Script for manual (remote) conversion
* Move unzipping of data to image transfer (to support conversion script above)
* Improve check setup script to also pull the sing.log for more info
* Align version with BIOMERO v1.10.0

**Full Changelog**: https://github.com/NL-BioImaging/biomero-scripts/compare/v1.9.0...v1.10.0

1.9.1

* Fix a breaking bug in the init method, introduced with escaping folder names. Should be able to setup new workflows again w/ v1.9.1.

**Full Changelog**: https://github.com/NL-BioImaging/biomero/compare/v1.9.0...v1.9.1

1.9.0

* Bump to BIOMERO v1.9.0
* Move more script variable names to BIOMERO library so that we can import them correctly in other scripts

**Full Changelog**: https://github.com/NL-BioImaging/biomero-scripts/compare/v1.8.0...v1.9.0

1.8.0

- Cleanup after conversion too
- Don't copy metadata from original images anymore (it copied datatype too)


**Full Changelog**: https://github.com/NL-BioImaging/biomero-scripts/compare/v1.7.1...v1.8.0

1.7.1

Fix bugs:
- Slurm job now stops complaining about missing Singularity
- CANCELLED+ state of job array is now handled properly (if you cancel a job array...)
- Cleanup now also removes the large amount of converter logs made by the job array
- Reduced DEBUG logging of imported modules from OMERO and Paramiko
- Fixed a printing bug in the minimal slurm script
- Turned more BIOMERO-scripts print statements into logger statements

**Full Changelog**: https://github.com/NL-BioImaging/biomero-scripts/compare/v1.7.0...v1.7.1

1.7.0

Finetuning!

- Added an Azure deployment for both BIOMERO and SLURM, go see the new tutorial!
- Made the init script async, because we cannot wait in OMERO for all the container images to download on SLURM. That does not scale.
- Split up a few of the init methods into their own methods so you could run them seperately
- Added a new script to check the 'progress' of available workflows on SLURM, called 'SLURM_check_setup'.
- Will probably rename the 'init' category to 'admin' if we keep adding more scripts that are not for end-users but for OMERO admins.

**Full Changelog**: https://github.com/NL-BioImaging/biomero-scripts/compare/v1.6.0...v1.7.0

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