Biomero

Latest version: v1.14.0

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1.8.0

- Cleanup after conversion too
- Don't copy metadata from original images anymore (it copied datatype too)

**Full Changelog**: https://github.com/NL-BioImaging/biomero/compare/v1.7.1...v1.8.0

1.7.1

Fix bugs:
- Slurm job now stops complaining about missing Singularity
- CANCELLED+ state of job array is now handled properly (if you cancel a job array...)
- Cleanup now also removes the large amount of converter logs made by the job array
- Reduced DEBUG logging of imported modules from OMERO and Paramiko
- Fixed a printing bug in the minimal slurm script
- Turned more BIOMERO-scripts print statements into logger statements

**Full Changelog**: https://github.com/NL-BioImaging/biomero/compare/v1.7.0...v1.7.1

1.7.0

Finetuning!

- Added an Azure deployment for both BIOMERO and SLURM, go see the new tutorial!
- Made the init script async, because we cannot wait in OMERO for all the container images to download on SLURM. That does not scale.
- Split up a few of the init methods into their own methods so you could run them seperately
- Added a new script to check the 'progress' of available workflows on SLURM, called 'SLURM_check_setup'.
- Will probably rename the 'init' category to 'admin' if we keep adding more scripts that are not for end-users but for OMERO admins.

**Full Changelog**: https://github.com/NL-BioImaging/biomero/compare/v1.6.0...v1.7.0

1.6.0

- Separated file conversion and slurm workflow into 2 jobs to avoid a deadlock
- Added a method to specifically run file conversion to biomero
- Added a slim / simple result class SlurmJob, to allow easier waiting on job completion on slurm. Note it is not asynchronous / concurrent. You just wait the current thread at this moment (which works fine with 1 workflow per omero job).
- Fixed the job status methods to handle job arrays too

**Full Changelog**: https://github.com/NL-BioImaging/biomero/compare/v1.5.1...v1.6.0

1.5.1

- [BUG] Fix bug where conversion script cannot handle filenames with spaces in them. Now it lists them properly.

**Full Changelog**: https://github.com/NL-BioImaging/biomero/compare/v1.5.0...v1.5.1

1.5.0

- Match versions with updated (batch) biomero-scripts (v1.5.0)
- Small updates to README/comments

**Full Changelog**: https://github.com/NL-BioImaging/biomero/compare/v1.4.0...v1.5.0

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