Biomero

These are compatible with v1.1.1 of BIOMERO

**Full Changelog**: https://github.com/NL-BioImaging/biomero-scripts/commits/v1.1.1

Publish the first version of the BIOMERO scripts to accompany the upcoming paper: BIOMERO.

Features:

- Initialize a Slurm environment
- Export data from OMERO to Slurm
- Import data from Slurm to OMERO
- Import job status / logs from Slurm to OMERO
- Run workflow on Slurm
- Run workflow batched on Slurm

Merry Christmas and a happy new year!

**Full Changelog**: https://github.com/NL-BioImaging/biomero-scripts/commits/v1.0.0

BIOMERO changes:
-
- Bugfixes:
- Added support for hyphens "-" in workflow parameters (e.g. in file suffix for cellprofiler measurements)

BIOMERO Scripts changes:
-
- Bugfixes:
- Now actually fail the whole workflow (via the event sourced database, for the dashboard) when subtasks encounter errors (e.g. slurm job failed)
- Fix attaching resulting images as attachment to the original image; was dependent on wrong variable
- Fix full workflow metadata being added to the result image again
- New Features:
- Add workflow ID to the image export folder filename (instead of timestamp)
- Add workflow ID to the resulting image name iff we attach it (so you can find it in OMERO); not if we add it to a dataset, then user still controls the name
- Add workflow ID to the resulting CSV file name when we attach it (so you can find it in OMERO)
- Add workflow ID to the resulting description of images/datasets/logfile that we create in OMERO (not just 'job id')

**Full Changelog**: https://github.com/Cellular-Imaging-Amsterdam-UMC/NL-BIOMERO/compare/v1.0.0-beta.6...v1.0.0-beta.7

- Pin omero boost to v1.0.0-alpha.1, built for production

**Full Changelog**: https://github.com/Cellular-Imaging-Amsterdam-UMC/NL-BIOMERO/compare/v1.0.0-beta.5...v1.0.0-beta.6

- Fix upload to datasets inside of projects

**Full Changelog**: https://github.com/Cellular-Imaging-Amsterdam-UMC/NL-BIOMERO/compare/v1.0.0-beta.1...v1.0.0-beta.4