Brainglobe

What's Changed
* Remove GUI by adamltyson in https://github.com/brainglobe/brainrender/pull/307
* Save animation example to cwd by adamltyson in https://github.com/brainglobe/brainrender/pull/308
* Update message warning about lack of allensdk by adamltyson in https://github.com/brainglobe/brainrender/pull/309
* [pre-commit.ci] pre-commit autoupdate by pre-commit-ci in https://github.com/brainglobe/brainrender/pull/310
* Update example notebook by adamltyson in https://github.com/brainglobe/brainrender/pull/311
* Update notebook example by adamltyson in https://github.com/brainglobe/brainrender/pull/312
* example to show probe tracks by jingjie-li in https://github.com/brainglobe/brainrender/pull/313
* Update readme images to use full URL by adamltyson in https://github.com/brainglobe/brainrender/pull/317
* Fix rotation bug when exproting to html by IgorTatarnikov in https://github.com/brainglobe/brainrender/pull/318

New Contributors
* jingjie-li made their first contribution in https://github.com/brainglobe/brainrender/pull/313

**Full Changelog**: https://github.com/brainglobe/brainrender/compare/v2.1.3...v2.1.4

What's Changed
* [pre-commit.ci] pre-commit autoupdate by pre-commit-ci in https://github.com/brainglobe/brainrender/pull/300
* [pre-commit.ci] pre-commit autoupdate by pre-commit-ci in https://github.com/brainglobe/brainrender/pull/303
* Update pre-commit monthly by adamltyson in https://github.com/brainglobe/brainrender/pull/301
* fix some vedo function calls still using lowerCamelCase instead of snake_case by carlocastoldi in https://github.com/brainglobe/brainrender/pull/304
* Simplify repo structure by adamltyson in https://github.com/brainglobe/brainrender/pull/306


**Full Changelog**: https://github.com/brainglobe/brainrender/compare/v2.1.2...v2.1.3

What's Changed
* Unpinned h5py version by IgorTatarnikov in https://github.com/brainglobe/brainrender/pull/299


**Full Changelog**: https://github.com/brainglobe/brainrender/compare/v2.1.1...v2.1.2

What's Changed
* various (small) improvements by marcomusy in https://github.com/brainglobe/brainrender/pull/291
* Fixed bug related to issue 293, amended tests to check in the future by IgorTatarnikov in https://github.com/brainglobe/brainrender/pull/296
* Update test badge by alessandrofelder in https://github.com/brainglobe/brainrender/pull/298
* deep copy the volume transform by alessandrofelder in https://github.com/brainglobe/brainrender/pull/297


**Full Changelog**: https://github.com/brainglobe/brainrender/compare/v2.1.0...v2.1.1

What's Changed
* Revisions by FedeClaudi in https://github.com/brainglobe/brainrender/pull/147
* Revisions by FedeClaudi in https://github.com/brainglobe/brainrender/pull/148
* Update getting_started.ipynb by seblammers in https://github.com/brainglobe/brainrender/pull/163
* Dev2 by FedeClaudi in https://github.com/brainglobe/brainrender/pull/167
* fix label and label's dot position by RobertoDF in https://github.com/brainglobe/brainrender/pull/177
* bug fix remove region in gui by RobertoDF in https://github.com/brainglobe/brainrender/pull/184
* fix for pointdensity by FedeClaudi in https://github.com/brainglobe/brainrender/pull/182
* Hetamap visualization by FedeClaudi in https://github.com/brainglobe/brainrender/pull/186
* Solve transparency bug in linux by RobertoDF in https://github.com/brainglobe/brainrender/pull/185
* Docstring changes and some suggestions by seankmartin in https://github.com/brainglobe/brainrender/pull/191
* Points density by FedeClaudi in https://github.com/brainglobe/brainrender/pull/194
* Vtk9 by FedeClaudi in https://github.com/brainglobe/brainrender/pull/195
* Add invert param to slice method of Scene by RobertoDF in https://github.com/brainglobe/brainrender/pull/201
* invert parameter missing by RobertoDF in https://github.com/brainglobe/brainrender/pull/211
* Add link to contributing guide by adamltyson in https://github.com/brainglobe/brainrender/pull/212
* Changed 'lexer_name' param to 'lexer' for rich update by rcpeene in https://github.com/brainglobe/brainrender/pull/223
* Update links in readme by adamltyson in https://github.com/brainglobe/brainrender/pull/232
* fix: retrieving meshes for a region present in the onthology but absent in the annotation atlas by carlocastoldi in https://github.com/brainglobe/brainrender/pull/246
* Add notice about lack of support by adamltyson in https://github.com/brainglobe/brainrender/pull/248
* minor installation/test running fixing by alessandrofelder in https://github.com/brainglobe/brainrender/pull/254
* pass DISPLAY env var to tox by alessandrofelder in https://github.com/brainglobe/brainrender/pull/260
* Potential fix for test_ruler_from_surface, removed transformation by IgorTatarnikov in https://github.com/brainglobe/brainrender/pull/262
* Fix windows install by alessandrofelder in https://github.com/brainglobe/brainrender/pull/263
* Install HDF5 for mac CI by alessandrofelder in https://github.com/brainglobe/brainrender/pull/265
* Standardise issue templates by adamltyson in https://github.com/brainglobe/brainrender/pull/267
* use pyvista action for headless display in tox by alessandrofelder in https://github.com/brainglobe/brainrender/pull/273
* Fix `test_export_html` and run it on CI by alessandrofelder in https://github.com/brainglobe/brainrender/pull/275
* Compatibility with vedo 2023.5.0 by IgorTatarnikov in https://github.com/brainglobe/brainrender/pull/277
* Fix video test by alessandrofelder in https://github.com/brainglobe/brainrender/pull/276
* All examples rendering correctly with vedo 2023.5.0 by IgorTatarnikov in https://github.com/brainglobe/brainrender/pull/281
* Remove setting of user-dependent FXAA vedo setting by alessandrofelder in https://github.com/brainglobe/brainrender/pull/283
* Tiny improvement to contributing guide by alessandrofelder in https://github.com/brainglobe/brainrender/pull/284
* Switch PySide2 for PyQt5 by IgorTatarnikov in https://github.com/brainglobe/brainrender/pull/287
* Mega fix of brainrender by alessandrofelder in https://github.com/brainglobe/brainrender/pull/250

New Contributors
* seblammers made their first contribution in https://github.com/brainglobe/brainrender/pull/163
* RobertoDF made their first contribution in https://github.com/brainglobe/brainrender/pull/177
* seankmartin made their first contribution in https://github.com/brainglobe/brainrender/pull/191
* rcpeene made their first contribution in https://github.com/brainglobe/brainrender/pull/223
* carlocastoldi made their first contribution in https://github.com/brainglobe/brainrender/pull/246
* alessandrofelder made their first contribution in https://github.com/brainglobe/brainrender/pull/254
* IgorTatarnikov made their first contribution in https://github.com/brainglobe/brainrender/pull/262

**Full Changelog**: https://github.com/brainglobe/brainrender/compare/v2.0.0.0...v2.1.0

Dependency Slimming

Main purpose of this release is a number of small fixes to atlases, and slimming down of the dependencies of this package.

If you are only interested in the AtlasAPI, a default install will no longer fetch the dependencies that are required for generating a new atlas. If you were previously using this package to generate atlases, you will need to install it with the optional `atlasgen` dependency.

What's Changed
* Return `brainglobe list` in alphabetical order by adamltyson in https://github.com/brainglobe/brainglobe-atlasapi/pull/298
* Return "Outside atlas" rather than key error by adamltyson in https://github.com/brainglobe/brainglobe-atlasapi/pull/299
* Remove slow test marker by adamltyson in https://github.com/brainglobe/brainglobe-atlasapi/pull/300
* Cache atlases to speed up CI by adamltyson in https://github.com/brainglobe/brainglobe-atlasapi/pull/301
* Fixing human atlas script by viktorpm in https://github.com/brainglobe/brainglobe-atlasapi/pull/290
* Fix AZBA by adamltyson in https://github.com/brainglobe/brainglobe-atlasapi/pull/305
* fixing kim dev atlases by viktorpm in https://github.com/brainglobe/brainglobe-atlasapi/pull/304
* [pre-commit.ci] pre-commit autoupdate by pre-commit-ci in https://github.com/brainglobe/brainglobe-atlasapi/pull/308
* Update supported Python versions by adamltyson in https://github.com/brainglobe/brainglobe-atlasapi/pull/309
* Move `pymcubes` to an optional dependency. by willGraham01 in https://github.com/brainglobe/brainglobe-atlasapi/pull/310


**Full Changelog**: https://github.com/brainglobe/brainglobe-atlasapi/compare/v2.0.6...v2.0.7