Brainglobe

What's Changed
* Update GH actions badge by adamltyson in https://github.com/brainglobe/brainglobe-workflows/pull/77
* Cellfinder config + path change by sfmig in https://github.com/brainglobe/brainglobe-workflows/pull/64
* Workflow tests caching by sfmig in https://github.com/brainglobe/brainglobe-workflows/pull/62
* Move analysis functionality to brainglobe-utils by adamltyson in https://github.com/brainglobe/brainglobe-workflows/pull/76


**Full Changelog**: https://github.com/brainglobe/brainglobe-workflows/compare/v1.1.1...v1.1.2

Minor updates to `brainmapper`

What's Changed
* Deal with cells falling outside of the registered atlas boundary by adamltyson in https://github.com/brainglobe/brainglobe-workflows/pull/71
* Rename incorrect instances of cellfinder to brainmapper by adamltyson in https://github.com/brainglobe/brainglobe-workflows/pull/67
* Simplify brainmapper export by adamltyson in https://github.com/brainglobe/brainglobe-workflows/pull/69
* Update cellfinder dependency by adamltyson in https://github.com/brainglobe/brainglobe-workflows/pull/66
* Move heatmap functionality to brainglobe-utils by adamltyson in https://github.com/brainglobe/brainglobe-workflows/pull/74
* Add hard dependency on brainglobe-meta package by willGraham01 in https://github.com/brainglobe/brainglobe-workflows/pull/72


**Full Changelog**: https://github.com/brainglobe/brainglobe-workflows/compare/v1.1.0...v1.1.1

cellfinder CLI name has been retired, use `brainmapper` instead

[See the blog post for full information](https://brainglobe.info/blog/version1/core_and_napari_merge.html).

What's Changed
* transfer back from `brainglobe-scripts` by alessandrofelder in https://github.com/brainglobe/brainglobe-workflows/pull/14
* Cellfinder workflow CLI input argument with tests by sfmig in https://github.com/brainglobe/brainglobe-workflows/pull/23
* Benchmark for cellfinder workflow with CLI arguments by sfmig in https://github.com/brainglobe/brainglobe-workflows/pull/24
* Update asv.conf.json to point to main branch by sfmig in https://github.com/brainglobe/brainglobe-workflows/pull/28
* Migrate `cellfinder` into this package by willGraham01 in https://github.com/brainglobe/brainglobe-workflows/pull/29


**Full Changelog**: https://github.com/brainglobe/brainglobe-workflows/commits/v1.0.0

**New**:
- added a new `Actor` class which makes it easier to manage how `Render` transforms actors at render time. `Actor` also create's labels and can be printed to get more details about a specific mehs
- exposed `scale` for screenshots (thanks vigji )

**Bug fixes**:
- multiple calls to `render` now transform neurons correctly
- `scene.add_brain_regions` now returns colored brain regions when only an hemisphere's mesh is requested

Rename and merge with `bg-atlasgen`

This package will be merging with `bg-atlasgen`, and then renaming to `brainglobe-atlasapi` for consistency with other BrainGlobe tools.
See https://github.com/brainglobe/BrainGlobe/issues/43 for details.

What's Changed
* Add CITATION.cff by willGraham01 in https://github.com/brainglobe/bg-atlasapi/pull/192
* Update test_and_deploy.yml by alessandrofelder in https://github.com/brainglobe/bg-atlasapi/pull/194
* [pre-commit.ci] pre-commit autoupdate by pre-commit-ci in https://github.com/brainglobe/bg-atlasapi/pull/195
* Add check manifest to CI by willGraham01 in https://github.com/brainglobe/bg-atlasapi/pull/196
* Add PyArrow as dependency by willGraham01 in https://github.com/brainglobe/bg-atlasapi/pull/197
* Prepare for merge and rename by willGraham01 in https://github.com/brainglobe/bg-atlasapi/pull/198

New Contributors
* alessandrofelder made their first contribution in https://github.com/brainglobe/bg-atlasapi/pull/194

**Full Changelog**: https://github.com/brainglobe/bg-atlasapi/compare/v1.0.3...v1.0.4

Bump to brainglobe-space dependency

What's Changed
* update travis by adamltyson in https://github.com/brainglobe/bg-atlasapi/pull/79
* Update testing by adamltyson in https://github.com/brainglobe/bg-atlasapi/pull/80
* Update readme by adamltyson in https://github.com/brainglobe/bg-atlasapi/pull/84
* Updating pbar and a couple other things by FedeClaudi in https://github.com/brainglobe/bg-atlasapi/pull/87
* Remove auto-print upon BrainGlobeAtlas construction by nickdelgrosso in https://github.com/brainglobe/bg-atlasapi/pull/89
* Atlas metadata print out by FedeClaudi in https://github.com/brainglobe/bg-atlasapi/pull/91
* Add osten mouse atlas to readme by adamltyson in https://github.com/brainglobe/bg-atlasapi/pull/93
* Move to GitHub actions by adamltyson in https://github.com/brainglobe/bg-atlasapi/pull/95
* Create code of conduct by adamltyson in https://github.com/brainglobe/bg-atlasapi/pull/97
* List all available atlases and their versions in machine-readable format (2) by nickdelgrosso in https://github.com/brainglobe/bg-atlasapi/pull/101
* Fix linting problems, and test on PR by adamltyson in https://github.com/brainglobe/bg-atlasapi/pull/102
* Fix NumPy future warning on get structure mask by seankmartin in https://github.com/brainglobe/bg-atlasapi/pull/106
* moved print to BrainGlobeAtlas by vigji in https://github.com/brainglobe/bg-atlasapi/pull/108
* Changes to config file location by chrisroat in https://github.com/brainglobe/bg-atlasapi/pull/111
* Optimize `get_structure_mask` for structures with many children by sdiebolt in https://github.com/brainglobe/bg-atlasapi/pull/120
* Lint setup fix by vigji in https://github.com/brainglobe/bg-atlasapi/pull/122
* Fix the `-` in requirements by paddyroddy in https://github.com/brainglobe/bg-atlasapi/pull/124
* Allow `-h` and `--help` for help by paddyroddy in https://github.com/brainglobe/bg-atlasapi/pull/125
* Add an optional attribute to handle updates during atlas downloads by yoda-vid in https://github.com/brainglobe/bg-atlasapi/pull/126
* Align with other BG packages by adamltyson in https://github.com/brainglobe/bg-atlasapi/pull/127
* Tutorial notebook improvements by raacampbell in https://github.com/brainglobe/bg-atlasapi/pull/128
* Add new atlas by adamltyson in https://github.com/brainglobe/bg-atlasapi/pull/133
* Update supported Python versions by dstansby in https://github.com/brainglobe/bg-atlasapi/pull/135
* Replace brainglobe with NI actions by dstansby in https://github.com/brainglobe/bg-atlasapi/pull/137
* Use standard pre-commit config by dstansby in https://github.com/brainglobe/bg-atlasapi/pull/138
* Switch to pyproject.toml by dstansby in https://github.com/brainglobe/bg-atlasapi/pull/139
* Error on warnings raised in tests by dstansby in https://github.com/brainglobe/bg-atlasapi/pull/140
* Turn off codecov comments by dstansby in https://github.com/brainglobe/bg-atlasapi/pull/145
* Build wheel when building package by dstansby in https://github.com/brainglobe/bg-atlasapi/pull/144
* Typo fixes by adamltyson in https://github.com/brainglobe/bg-atlasapi/pull/151
* Update links by adamltyson in https://github.com/brainglobe/bg-atlasapi/pull/152
* [pre-commit.ci] pre-commit autoupdate by pre-commit-ci in https://github.com/brainglobe/bg-atlasapi/pull/153
* [pre-commit.ci] pre-commit autoupdate by pre-commit-ci in https://github.com/brainglobe/bg-atlasapi/pull/154
* [pre-commit.ci] pre-commit autoupdate by pre-commit-ci in https://github.com/brainglobe/bg-atlasapi/pull/155
* [pre-commit.ci] pre-commit autoupdate by pre-commit-ci in https://github.com/brainglobe/bg-atlasapi/pull/156
* [pre-commit.ci] pre-commit autoupdate by pre-commit-ci in https://github.com/brainglobe/bg-atlasapi/pull/158
* [pre-commit.ci] pre-commit autoupdate by pre-commit-ci in https://github.com/brainglobe/bg-atlasapi/pull/159
* [pre-commit.ci] pre-commit autoupdate by pre-commit-ci in https://github.com/brainglobe/bg-atlasapi/pull/160
* [pre-commit.ci] pre-commit autoupdate by pre-commit-ci in https://github.com/brainglobe/bg-atlasapi/pull/162
* [pre-commit.ci] pre-commit autoupdate by pre-commit-ci in https://github.com/brainglobe/bg-atlasapi/pull/164
* [pre-commit.ci] pre-commit autoupdate by pre-commit-ci in https://github.com/brainglobe/bg-atlasapi/pull/165
* [pre-commit.ci] pre-commit autoupdate by pre-commit-ci in https://github.com/brainglobe/bg-atlasapi/pull/166
* Set pre-commit autoupdate frequency to monthly by adamltyson in https://github.com/brainglobe/bg-atlasapi/pull/167
* [pre-commit.ci] pre-commit autoupdate by pre-commit-ci in https://github.com/brainglobe/bg-atlasapi/pull/168
* [pre-commit.ci] pre-commit autoupdate by pre-commit-ci in https://github.com/brainglobe/bg-atlasapi/pull/171
* Fix download progress bar by IgorTatarnikov in https://github.com/brainglobe/bg-atlasapi/pull/178
* [pre-commit.ci] pre-commit autoupdate by pre-commit-ci in https://github.com/brainglobe/bg-atlasapi/pull/181
* Remove banner image by adamltyson in https://github.com/brainglobe/bg-atlasapi/pull/185
* [pre-commit.ci] pre-commit autoupdate by pre-commit-ci in https://github.com/brainglobe/bg-atlasapi/pull/186
* [pre-commit.ci] pre-commit autoupdate by pre-commit-ci in https://github.com/brainglobe/bg-atlasapi/pull/188
* Add citation info by adamltyson in https://github.com/brainglobe/bg-atlasapi/pull/189
* Various housekeeping by adamltyson in https://github.com/brainglobe/bg-atlasapi/pull/190
* Bump to brainglobe space by willGraham01 in https://github.com/brainglobe/bg-atlasapi/pull/191

New Contributors
* nickdelgrosso made their first contribution in https://github.com/brainglobe/bg-atlasapi/pull/89
* seankmartin made their first contribution in https://github.com/brainglobe/bg-atlasapi/pull/106
* chrisroat made their first contribution in https://github.com/brainglobe/bg-atlasapi/pull/111
* sdiebolt made their first contribution in https://github.com/brainglobe/bg-atlasapi/pull/120
* yoda-vid made their first contribution in https://github.com/brainglobe/bg-atlasapi/pull/126
* raacampbell made their first contribution in https://github.com/brainglobe/bg-atlasapi/pull/128
* dstansby made their first contribution in https://github.com/brainglobe/bg-atlasapi/pull/135
* pre-commit-ci made their first contribution in https://github.com/brainglobe/bg-atlasapi/pull/153
* IgorTatarnikov made their first contribution in https://github.com/brainglobe/bg-atlasapi/pull/178
* willGraham01 made their first contribution in https://github.com/brainglobe/bg-atlasapi/pull/191

**Full Changelog**: https://github.com/brainglobe/bg-atlasapi/compare/v1.0.0...v1.0.3