Brainglobe

Latest version: v1.3.1

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1.3.0rc1

What's Changed
* Update __init__.py by adamltyson in https://github.com/brainglobe/cellfinder/pull/427
* Update final few lines to python 3.11 by adamltyson in https://github.com/brainglobe/cellfinder/pull/428
* Moved force cpu into cellfinder function by IgorTatarnikov in https://github.com/brainglobe/cellfinder/pull/430


**Full Changelog**: https://github.com/brainglobe/cellfinder/compare/v1.3.0rc0...v1.3.0rc1

1.3.0rc0

Release candidate to test move to torch

What's Changed
* Update caching by adamltyson in https://github.com/brainglobe/cellfinder/pull/422
* Updating to Keras 3.0 and migrating to PyTorch by IgorTatarnikov in https://github.com/brainglobe/cellfinder/pull/418


**Full Changelog**: https://github.com/brainglobe/cellfinder/compare/v1.2.0...v1.3.0rc0

1.2.0

What's Changed
* Add codecov token by K-Meech in https://github.com/brainglobe/brainglobe-workflows/pull/91
* Update gitignore by sfmig in https://github.com/brainglobe/brainglobe-workflows/pull/92
* Remove entry point for cellfinder workflow by sfmig in https://github.com/brainglobe/brainglobe-workflows/pull/93
* Cache cellfinder model in CI by sfmig in https://github.com/brainglobe/brainglobe-workflows/pull/97
* naive attempt at fixing HDF5 by alessandrofelder in https://github.com/brainglobe/brainglobe-workflows/pull/100
* Run cellfinder benchmarks on small data by sfmig in https://github.com/brainglobe/brainglobe-workflows/pull/94
* Cache atlases in CI for brainmapper tests by sfmig in https://github.com/brainglobe/brainglobe-workflows/pull/101
* Cache for cellfinder workflow tests by sfmig in https://github.com/brainglobe/brainglobe-workflows/pull/102
* Check benchmarks on CI by sfmig in https://github.com/brainglobe/brainglobe-workflows/pull/96
* Rename `cellfinder_core` to `cellfinder` by sfmig in https://github.com/brainglobe/brainglobe-workflows/pull/95
* Support single z-stack tif file for input by matham in https://github.com/brainglobe/brainglobe-workflows/pull/88
* Update use of cellfinder.core download cli by adamltyson in https://github.com/brainglobe/brainglobe-workflows/pull/107
* Follow numpy structure and add asv-specific README by sfmig in https://github.com/brainglobe/brainglobe-workflows/pull/104
* Update use of brainglobe-utils image IO by adamltyson in https://github.com/brainglobe/brainglobe-workflows/pull/108

New Contributors
* K-Meech made their first contribution in https://github.com/brainglobe/brainglobe-workflows/pull/91

**Full Changelog**: https://github.com/brainglobe/brainglobe-workflows/compare/v1.1.5...v1.2.0

1.1.5

What's Changed
* update atlas api import with new name by alessandrofelder in https://github.com/brainglobe/brainglobe-workflows/pull/86
* Replace source_custom_config_cellfinder with newer function by matham in https://github.com/brainglobe/brainglobe-workflows/pull/89

New Contributors
* matham made their first contribution in https://github.com/brainglobe/brainglobe-workflows/pull/89

**Full Changelog**: https://github.com/brainglobe/brainglobe-workflows/compare/v1.1.4...v1.1.5

1.1.4

What's Changed
* Update test_and_deploy.yml by alessandrofelder in https://github.com/brainglobe/brainglobe-workflows/pull/81
* brainglobe_space name change by sfmig in https://github.com/brainglobe/brainglobe-workflows/pull/82


**Full Changelog**: https://github.com/brainglobe/brainglobe-workflows/compare/v1.1.3...v1.1.4

1.1.3

What's Changed
* Remove unused code and refactor by adamltyson in https://github.com/brainglobe/brainglobe-workflows/pull/79


**Full Changelog**: https://github.com/brainglobe/brainglobe-workflows/compare/v1.1.2...v1.1.3

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