Bug fix from previous release. Some allele combinations were missed.
0.12.1
Fix to prevent allele combinations across VCF records that result in the same sequence.
0.12.0
Improved merging and clustering of VCFs, as part of rewrite of minos regenotyping pipeline to handle huge numbers of samples.
0.11.1
When clustering, always try to remove duplicate records (instead of only trying if total number of records <1000). This fixed bug in minos regenotyping pipeline.
0.11.0
When clustering VCF records, default is now to not put adjacent records in the same cluster (see issue 39). Rationale: gramtools graph can now handle adjacent variants, so this reduces total number of alleles by no longer generating combinations from adjacent variants.
0.10.3
Bug fix handling POS<1. When the clusterer runs, it now skips these records instead of throwing an error.