Cluster-vcf-records

Latest version: v0.13.3

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0.3.0

* added simple VCF merger
* better clustering where large deletions are involved (with new max_alleles_per_cluster option)
* bug fixes involving recognising that in indel can be represented in more than one way in a VCF file (eg homopolymers)

0.2.0

* new option `merge_method` when clustering. Let's you choose between existing gramtools method, and a simple merging of VCF records, without enumerating through all combinations

* bug fix where some combinations of variants were missed when clustering

0.1.1

Fix typo in vcf_file_read.vcf_file_to_dict(). Option renamed remove_useless_start_nulceotides -> remove_useless_start_nucleotides

0.1.0

New method: VcfRecord. called_alts_from_genotype()

0.0.2

Bug fix key error during clustering

0.0.1

Initial release

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