Gnomonicus

Latest version: v2.6.3

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2.1.2

Bump `gumpy` version to ensure bug fix

2.1.1

What's Changed
* Add version flag by JeremyWesthead in https://github.com/oxfordmmm/gnomonicus/pull/29
* Added pushing to OCR as well as dockerhub for GPAS by JeremyWesthead in https://github.com/oxfordmmm/gnomonicus/pull/30
* Added s3fs req by JeremyWesthead in https://github.com/oxfordmmm/gnomonicus/pull/32
* `gene_name` --> `gene` in variants.csv for 33 by JeremyWesthead in https://github.com/oxfordmmm/gnomonicus/pull/34
* Added error handling to temporarily appease oxfordmmm/gumpy24 by JeremyWesthead in https://github.com/oxfordmmm/gnomonicus/pull/35


**Full Changelog**: https://github.com/oxfordmmm/gnomonicus/compare/v2.1.0...v2.1.1

2.1.0

What's Changed
* Fix pickled genome issue by JeremyWesthead in https://github.com/oxfordmmm/gnomonicus/pull/17
* Bug fixes by JeremyWesthead in https://github.com/oxfordmmm/gnomonicus/pull/20
* Ensure all values are properly converted to null by JeremyWesthead in https://github.com/oxfordmmm/gnomonicus/pull/21
* Fix for 22 by JeremyWesthead in https://github.com/oxfordmmm/gnomonicus/pull/24
* Fix for minor indel nc changes by JeremyWesthead in https://github.com/oxfordmmm/gnomonicus/pull/25


**Full Changelog**: https://github.com/oxfordmmm/gnomonicus/compare/v2.0.0...v2.1.0

2.0.0

What's Changed
* Large deletions by JeremyWesthead in https://github.com/oxfordmmm/gnomonicus/pull/12
* Cicd docs by JeremyWesthead in https://github.com/oxfordmmm/gnomonicus/pull/14
* Minor aa fixes by JeremyWesthead in https://github.com/oxfordmmm/gnomonicus/pull/15


**Full Changelog**: https://github.com/oxfordmmm/gnomonicus/compare/v1.1.3...v2.0.0

1.1.3

What's Changed
* Various improvements to tests. Now at 100% coverage by JeremyWesthead in https://github.com/oxfordmmm/gnomonicus/pull/7
* Fixed minority populations. Added extra tests for these by JeremyWesthead in https://github.com/oxfordmmm/gnomonicus/pull/8
* Add minor index parsing to the CLI script + various pandas index fixes by JeremyWesthead in https://github.com/oxfordmmm/gnomonicus/pull/9
* Explictly type cast pandas DataFrames to avoid FutureWarnings by JeremyWesthead in https://github.com/oxfordmmm/gnomonicus/pull/10


**Full Changelog**: https://github.com/oxfordmmm/gnomonicus/compare/v1.1.2...v1.1.3

1.1.2

Bump gumpy version
This pulls in a bug fix which was causing erroneous `InvaluidMutationException` to be raised when a deletion started in a promoter and passed the gene end

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