- Include SNV pooling options (big update with lots of changes)
- Include "cov1 = pd.Series(dtype='float64')" in readComparer.py to suppress a future warning
- Remove cryptic SNVs from the nonredundant_snv_table (https://github.com/MrOlm/inStrain/issues/102)
- Only produce the run report when run in debug mode
- Various minor stylistic tweaks in runtime reporting