Changes
GUI
- Atlas Editor label names readability: word-wrapped, transluscent background for better color contrast
- Keeps ROI within the zoomed overview plot in the ROI Editor when possible
- Stretch the color value range in discete colormaps while avoiding fully dark RGB colors
- Experimental discrete colormap based on evenly spaced RGB values
CLI
- Translates "none" into a `None` object for default settings
- Profile modifier dictionary settings update rather than overwrite prior dictionaries
Atlas refinement:
- Incorporated skeletonization along with erosion and watershed as a form of adaptive morphology to retain thin structures
- Lateral extension models the underlying histology using a serial 2D version of the edge-aware watershed and tapering off labels, preferentially central labels
- Smooths labels during lateral extension to remove artifacts
- In-paints rather than uses closing filter to close ventricles for more gradual, smoother filling
- Option to export intermediate steps during lateral edge extension
- Fixed reported erosion to marker filter and size values
I/O
- Simple export of overlaid registered files using a list of image paths
- Fixed making all values below vmin transparent
- Fixed exporting a stack when the first image is turne off
Server pipelines:
- Fixed reloading swap files from NVMe devices
R stats and plots
- Fixed p-value adjustment/correction to only apply to stats with 2 or more values