Pyrodigal

Latest version: v3.6.3

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2.2.0

Changed
- Release GIL while masking sequence regions in `Sequence.__init__`.
- Use [`archspec`](https://pypi.org/project/archspec) instead of `cpu_features` for runtime feature detection.

Added
- Support for reading `gzip` and `bz2`-compressed input in the CLI.
- CLI flag to run ORF detection in parallel when input contains several contigs.

Removed
- Support for Python 3.5.

2.1.0

Changed
- Update Prodigal to `v2.6.3+c1e2d36` to fix a bug with Shine-Dalgarno detection on reverse contig edge ([hyattpd/Prodigal100](https://github.com/hyattpd/Prodigal/pull/100)).

Added
- CLI flags to set the minimum gene size ([32](https://github.com/althonos/pyrodigal/pull/32), by [cjprybol](https://github.com/cjprybol)).

Fixed
- ArchLinux User Repository package generation in CI.

2.0.4

Fixed
- GC% computation and RBS scoring for reverse strand nodes close to the contig edge ([27](https://github.com/althonos/pyrodigal/issues/27)).

2.0.3

Fixed
- `OrfFinder(mask=True)` ignoring the minimum mask size when masking regions ([26](https://github.com/althonos/pyrodigal/issues/26)).

Changed
- Use `cibuildhweel` for building wheel distributions.

Added
- Wheels for MacOS Aarch64 platforms.

2.0.2

Fixed
- Syntax issue in Cython files failing build on Bioconda runner.

2.0.1

Fixed
- Syntax issue in Cython files failing build on some environments.

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