Scadnano

So that we don't have to bump the version on the Python repo every time we put out a new version on the Dart repo, and vice versa, I'm going to try this convention: `MAJOR.MINOR.PATCH-REALLYMINOR`, where we don't bother keeping the REALLYMINOR versions in sync. bumping anything else means that both repos should put out a new version, for example for the web interface to display something that was just implemented in the Python package.

Commits
- [[672a0cc](https://github.com/UC-Davis-molecular-computing/scadnano/commit/672a0ccec50b95c185e7288843950b14ea8368f4)]: added instructions to CONTRIBUTING.md for automatic versioning (David Doty) [#330](https://github.com/UC-Davis-molecular-computing/scadnano/pull/330)
- [[44e0895](https://github.com/UC-Davis-molecular-computing/scadnano/commit/44e0895546cec1399bfc0e3cdaea094f2aff6e46)]: added note to CONTRIBUTING.md about PyPI .tar.gz files being ignored by git (David Doty) [#330](https://github.com/UC-Davis-molecular-computing/scadnano/pull/330)
- [[1f87255](https://github.com/UC-Davis-molecular-computing/scadnano/commit/1f872552de2c0b1080f7d94131f35b4f2f81a348)]: cleaned up some code and tooltip hover text for menu items (David Doty) [#330](https://github.com/UC-Davis-molecular-computing/scadnano/pull/330)
- [[ae43ba3](https://github.com/UC-Davis-molecular-computing/scadnano/commit/ae43ba3e7f42c94aa35d6c6071bbe278da7ffd12)]: closes #327 (invert side view y-axis when "Invert y axis" option is selected) (David Doty) [330](https://github.com/UC-Davis-molecular-computing/scadnano/pull/330)
- [[6f4673a](https://github.com/UC-Davis-molecular-computing/scadnano/commit/6f4673a35c5c87bb5fac9e6bdaaba254078ef6b9)]: closes #328 (display major tick offsets directly above base to the right of the tick); closes 329 (display major tick widths below helix) (David Doty) [330](https://github.com/UC-Davis-molecular-computing/scadnano/pull/330)
- [[550c170](https://github.com/UC-Davis-molecular-computing/scadnano/commit/550c170642334c799106af07b6f6296590f70e49)]: fixed bug when major_tick_distance is not specified in JSON for either the design or for individual helices and grid is none; now defaults to showing no major ticks in this case (David Doty) [#330](https://github.com/UC-Davis-molecular-computing/scadnano/pull/330)
- [[d65f545](https://github.com/UC-Davis-molecular-computing/scadnano/commit/d65f545a29dc354d4da96b3b8a0b1d5e36a8cc5a)]: fixed bug with default DNADesign not having major_tick_distance specified (David Doty) [#330](https://github.com/UC-Davis-molecular-computing/scadnano/pull/330)
- [[7a66d11](https://github.com/UC-Davis-molecular-computing/scadnano/commit/7a66d111313f784732b39f82dced8c948d0e29c1)]: bumped version (David Doty) [#330](https://github.com/UC-Davis-molecular-computing/scadnano/pull/330)

This version should speed up rendering on large designs. There are still some performance problems, so I'm keeping 191 open while we continue to track those down. But it should be much faster than a few versions ago.

Commits
- [[f41af5a](https://github.com/UC-Davis-molecular-computing/scadnano/commit/f41af5a4a4b6d8bb2bd9107225d3479e69837e03)]: make default max_offset on every helix equal to the max end of domain on any helix; closes #351 (rishabhmudradi) [385](https://github.com/UC-Davis-molecular-computing/scadnano/pull/385)
- [[96e037f](https://github.com/UC-Davis-molecular-computing/scadnano/commit/96e037f138630566db5389ab37e1ef37dbc62495)]: Fixing code in 'to_json_serializable' (rishabhmudradi) [#385](https://github.com/UC-Davis-molecular-computing/scadnano/pull/385)
- [[fef459d](https://github.com/UC-Davis-molecular-computing/scadnano/commit/fef459ddc0d784f3e2214c7a4b94421b88e240a3)]: Updating issue in 'to_json_serializable' (rishabhmudradi) [#385](https://github.com/UC-Davis-molecular-computing/scadnano/pull/385)
- [[fea18e2](https://github.com/UC-Davis-molecular-computing/scadnano/commit/fea18e2479d062e754a9b4054639d34963f7bf9a)]: Updating code to ensure all test cases pass. (rishabhmudradi) [#385](https://github.com/UC-Davis-molecular-computing/scadnano/pull/385)
- [[92782c0](https://github.com/UC-Davis-molecular-computing/scadnano/commit/92782c0ad6b3989c68defa2708a33b6c5976cb00)]: changed name of method from_file in tutorial to from_scadnano_file, its new name (David Doty) [#391](https://github.com/UC-Davis-molecular-computing/scadnano/pull/391)
- [[e23f53b](https://github.com/UC-Davis-molecular-computing/scadnano/commit/e23f53bc1cf6e88848b4f304d1749a15b7f98ca5)]: changed tutorial to link directly to raw file (David Doty) [#391](https://github.com/UC-Davis-molecular-computing/scadnano/pull/391)
- [[4606aad](https://github.com/UC-Davis-molecular-computing/scadnano/commit/4606aadf3df8dd7255941a743a507367b9bca799)]: updated tutorial to mention method of dragging file from file browser to open it in scadnano (David Doty) [#391](https://github.com/UC-Davis-molecular-computing/scadnano/pull/391)
- [[9eb1c9f](https://github.com/UC-Davis-molecular-computing/scadnano/commit/9eb1c9f58034ceda373546c18ee0d4ad668ca722)]: Adding 'default_helix_max_offsets' test and updating code (rishabhmudradi) [#385](https://github.com/UC-Davis-molecular-computing/scadnano/pull/385)
- [[504c47e](https://github.com/UC-Davis-molecular-computing/scadnano/commit/504c47e2a2583fb1b1a83992b80c1759a87ad6a8)]: updated to OverReact 3.7.0; changed to use PureComponentMixin instead of custom PureComponent (David Doty) [#391](https://github.com/UC-Davis-molecular-computing/scadnano/pull/391)
- [[0d3b8fb](https://github.com/UC-Davis-molecular-computing/scadnano/commit/0d3b8fb161fa6967d7136b8fd3bdc0fc3a82de23)]: switched back to custom implementation of PureComponent; new PureComponentMixin in OverReact uses only identical, not ==, so doesn't work for us (David Doty) [#390](https://github.com/UC-Davis-molecular-computing/scadnano/pull/390)
- [[4d53de8](https://github.com/UC-Davis-molecular-computing/scadnano/commit/4d53de849746c32204eb85e30b0c6ac7ea1b05a4)]: changed views in DesignMainStrands and under to use global variables in their event handlers to compute Actions to dispatch; this speeds up rendering because those variables no longer need to be passed in as props to the components if they do not affect its visual appearance, reducing the number of re-renders necessary (David Doty) [#390](https://github.com/UC-Davis-molecular-computing/scadnano/pull/390)
- [[11dd431](https://github.com/UC-Davis-molecular-computing/scadnano/commit/11dd4318ef793daa55392b40a6925c7a7d780f09)]: added some examples from Python package, and made very_large_origami an example that can be loaded from the menu (David Doty) [#390](https://github.com/UC-Davis-molecular-computing/scadnano/pull/390)
- [[b6002da](https://github.com/UC-Davis-molecular-computing/scadnano/commit/b6002da554443bd12a07f85e3c6f68949ea48f74)]: turned off Redux DevTools, which is expensive on large designs (David Doty) [#390](https://github.com/UC-Davis-molecular-computing/scadnano/pull/390)
- [[5bf1fa6](https://github.com/UC-Davis-molecular-computing/scadnano/commit/5bf1fa60dde2e6f1ea412076da32cd99331f0fc6)]: only population side_selected_helix_idxs for a Strand if only_display_selected_helices=true; fixes #374 (David Doty) [390](https://github.com/UC-Davis-molecular-computing/scadnano/pull/390)
- [[9ee50e2](https://github.com/UC-Davis-molecular-computing/scadnano/commit/9ee50e2e474316a64297d44c611fd522eb2a461f)]: bumped version (David Doty) [#390](https://github.com/UC-Davis-molecular-computing/scadnano/pull/390)

A few of the previous releases were broken due to some git synchonization nightmares we were having. It seems to be back on track now.

Commits
- [[05bc17f](https://github.com/UC-Davis-molecular-computing/scadnano/commit/05bc17f2e17ad231edd0ade6bb76f68428628d36)]: fixed bug where scaffold/staple selected when selecting "all ends" select mode (David Doty) [#384](https://github.com/UC-Davis-molecular-computing/scadnano/pull/384)

Not much changed; this release was to test the automated publishing of the package to PyPI through a new GitHub Action.

Commits
- [[a0e9f7f](https://github.com/UC-Davis-molecular-computing/scadnano-python-package/commit/a0e9f7fe09d227ad51ec7f81342bd7cf8726f7fe)]: updated installation instructions with detailed pip cases (David Doty) [#115](https://github.com/UC-Davis-molecular-computing/scadnano-python-package/pull/115)
- [[358e389](https://github.com/UC-Davis-molecular-computing/scadnano-python-package/commit/358e3892a8d517445fdeade33515d8e7630657b5)]: corrected grammar in README (David Doty) [#115](https://github.com/UC-Davis-molecular-computing/scadnano-python-package/pull/115)
- [[d8249ae](https://github.com/UC-Davis-molecular-computing/scadnano-python-package/commit/d8249ae549a091bbf2f4de90fcd969d581b8024a)]: updated README instructions on using Python 3.6 (David Doty) [#115](https://github.com/UC-Davis-molecular-computing/scadnano-python-package/pull/115)
- [[4992423](https://github.com/UC-Davis-molecular-computing/scadnano-python-package/commit/4992423ee51b46f10b9be534689a978931450fd2)]: Setup workflow to publish to PyPI (Benjamin Lee) [#114](https://github.com/UC-Davis-molecular-computing/scadnano-python-package/pull/114)
- [[a3e6b1c](https://github.com/UC-Davis-molecular-computing/scadnano-python-package/commit/a3e6b1cb4562d9bd2214ed59fff369ae6fce2284)]: bumped version to test automated package updating on PyPI (David Doty) [#115](https://github.com/UC-Davis-molecular-computing/scadnano-python-package/pull/115)
- [[b3a880e](https://github.com/UC-Davis-molecular-computing/scadnano-python-package/commit/b3a880e2238b2d622cb175bef61f4eef23fefec4)]: Append python publish to release workflow (Benjamin Lee) [#116](https://github.com/UC-Davis-molecular-computing/scadnano-python-package/pull/116)

Commits
- [[261e8f0](https://github.com/UC-Davis-molecular-computing/scadnano/commit/261e8f0774c98ed0b672011159b290570ecc1ce4)]: fixed bug in clicking all ends select mode from improper resolution of merge conflicts on last PR; bumped version (David Doty) [#381](https://github.com/UC-Davis-molecular-computing/scadnano/pull/381)

Commits
- [[9627b63](https://github.com/UC-Davis-molecular-computing/scadnano/commit/9627b63c44ff8f3439d5d233bfe3e1cde13fe6a5)]: fixed bug with removing strand select mode when clicking on "all ends" select mode; bumped version (David Doty) [#380](https://github.com/UC-Davis-molecular-computing/scadnano/pull/380)
- [[ddef0b0](https://github.com/UC-Davis-molecular-computing/scadnano/commit/ddef0b0ca045fb16f90fbeca5929b92185fcb573)]: Merge branch 'master' into dev (David Doty) [#380](https://github.com/UC-Davis-molecular-computing/scadnano/pull/380)