Scadnano

Latest version: v0.19.4

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0.9.6

Commits
- [[24ff64f](https://github.com/UC-Davis-molecular-computing/scadnano-python-package/commit/24ff64f555d558d00f48664adcacb3170c2d435e)]: bumped version and updated doc/requirements.txt in response to dependabot alerts (David Doty) [#103](https://github.com/UC-Davis-molecular-computing/scadnano-python-package/pull/103)

0.9.5

Based on this: readthedocs/readthedocs.org4868, seems like "latest" tag is confusing readthedocs. This release fixes that.

0.9.4

Commits
- [[128baa0](https://github.com/UC-Davis-molecular-computing/scadnano-python-package/commit/128baa0302122640d1835bd50ce4a393c8878e6f)]: ignoring dist/ directory from now on (where PyPI .tar.gz files are created) (David Doty) [#98](https://github.com/UC-Davis-molecular-computing/scadnano-python-package/pull/98)
- [[0b830a2](https://github.com/UC-Davis-molecular-computing/scadnano-python-package/commit/0b830a2d78666ea9c30f5798533006c3d286403c)]: removed dist/ directory from tracking (David Doty) [#98](https://github.com/UC-Davis-molecular-computing/scadnano-python-package/pull/98)
- [[c3e2c12](https://github.com/UC-Davis-molecular-computing/scadnano-python-package/commit/c3e2c12406b105c42f557e0cb530312250ed4d5a)]: add with_domain_label for method chaining; closes #93 (David Doty) [98](https://github.com/UC-Davis-molecular-computing/scadnano-python-package/pull/98)
- [[18ba037](https://github.com/UC-Davis-molecular-computing/scadnano-python-package/commit/18ba0375480a9cc41dc1f1b517a4a604063f4bdf)]: corrected README link to write_idt_plate_excel_file (David Doty) [#98](https://github.com/UC-Davis-molecular-computing/scadnano-python-package/pull/98)
- [[8d86dff](https://github.com/UC-Davis-molecular-computing/scadnano-python-package/commit/8d86dff1188c408ad11707955e4f366b618ce2cc)]: updated citation for paper from arXiv to DNA 26 (David Doty) [#98](https://github.com/UC-Davis-molecular-computing/scadnano-python-package/pull/98)
- [[fed5149](https://github.com/UC-Davis-molecular-computing/scadnano-python-package/commit/fed5149271e0f6183eb544588dcbf61c312544ba)]: bumped version (David Doty) [#98](https://github.com/UC-Davis-molecular-computing/scadnano-python-package/pull/98)

0.9.3

Commits
- [[c4db84a](https://github.com/UC-Davis-molecular-computing/scadnano-python-package/commit/c4db84a647e5cd3528347996b97a4ebae2a29a0f)]: bumped version from 0.9.2 to 0.9.3 (David Doty) [#97](https://github.com/UC-Davis-molecular-computing/scadnano-python-package/pull/97)

0.9.2

This is the first release that has automated release notes, but since the previous one didn't they weren't automatically generated. Future releases should be automatically documented here. I'm manually pasting in changes from PR 96

dave-doty
changed name of parameters in Crossover, add_half_crossover, and add_… …
6a4d537
…full_crossover
dave-doty
fixed name shadowing bug
0a93dbd
dave-doty
cleaned up docstrings
ffdd62f
dave-doty
cleaned up docstrings
d33dbae
dave-doty
replaced parameter names in calls to add_*_crossover
9dc504f
dave-doty
added code to check for overlapping domains in post_init of Strand
0426e10
dave-doty
fixes 85: allow chained commands for less verbose way to add Strands to DNADesign
f36d223
dave-doty
added a few chained methods for modifying strands
534fc8a
dave-doty
updated docstrings
aa0e16d
dave-doty
cleaned up docstrings
bfe6150
dave-doty
cleaned up some PEP warnings
7ef61cf
dave-doty
closes 87: add chained command for adding new domain on current helix
b10e6ee
dave-doty
fixes 92: make ColorCycler part of DNADesign
5b001fa
dave-doty
added Kelly colors, but not using them yet
700c95a
dave-doty
closes 84: add Geometry parameters field to DNADesign
033529f
dave-doty
closes 90: custom extension in write_scadnano_file
2849caa
dave-doty
closes 86: support domain labels, strand labels
6c67b5a
dave-doty
closes 88: add StrandBuilder.with_domain_sequence
0462097
dave-doty
updated docstrings
fb38cb9
dave-doty
cleaned up docstrings
b6bc810
dave-doty
removed note about web interface in tutorial since none of the menus … …
8c66ac0
…are shown
dave-doty
moved Python code from web interface README to here
30a60db
dave-doty
minor
c8b3a21
dave-doty
reordered sections
af09199
dave-doty
changed section title
056ad56
dave-doty
changed name of z_step to rise_per_base_pair.
9f9a013
dave-doty
modified example with many DNA modifications to have every combinatio… …
1dc9479
…n of modifications on forward and reverse strands, on both helices, to help with testing "invert y axis" view option in web interface.
UnHumbleBen
Create release.yml
3d4f93b
dave-doty
changed name of z_step to rise_per_base_pair in unit tests
5742687

0.9.1

removed `forward` and `reverse` helper variables from scadnano. So you'll have to replace this:

python
import scadnano as sc

domain1 = sc.Domain(0, sc.forward, 0, 10)
domain2 = sc.Domain(0, sc.reverse, 0, 10)


with this

python
import scadnano as sc

domain1 = sc.Domain(0, True, 0, 10)
domain2 = sc.Domain(0, False, 0, 10)

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