Scarf

Latest version: v0.29.4

Safety actively analyzes 666166 Python packages for vulnerabilities to keep your Python projects secure.

Scan your dependencies

Page 3 of 12

0.28.5

What's Changed
* Critical bug fix in `make_bulk` da78fec7e825c5667244fd0da06a9e558ebde0cd
* Bug in `set_feature_stats` 18d8c516edb3cbef3190d3266517361b8b87e54c


**Full Changelog**: https://github.com/parashardhapola/scarf/compare/0.28.4...0.28.5

0.28.4

What's Changed

* Increased default Harmony iterations. https://github.com/parashardhapola/scarf/commit/550d863e2771a32b8ef73583b3f7377c0097c9cf
* Improved handling of assay names in CrReader. https://github.com/parashardhapola/scarf/commit/d41e5bd288c6fd8732ae1714be0291641909728d
* Bug fixes for sparse matrix handling in different readers. https://github.com/parashardhapola/scarf/commit/684a3389f8d3f0045458d8a912f01b0122560dfe

**Full Changelog**: https://github.com/parashardhapola/scarf/compare/0.28.3...0.28.4

0.28.3

What's Changed

* Bug fix for missing blacklist in `mark_hvgs`
* Bug fix in `binned_sampling`
* Sparse write support in `ZarrMerge`

**Full Changelog**: https://github.com/parashardhapola/scarf/compare/0.28.2...0.28.3

0.28.2

What's Changed
* Fixes/pseudotime by parashardhapola in https://github.com/parashardhapola/scarf/pull/97


**Full Changelog**: https://github.com/parashardhapola/scarf/compare/0.28.1...0.28.2

0.28.1

What's Changed

* Fixes in `iter_normed_feature_wise` when few features in assay
* Misc. type hinting fixes
* Misc. Docstring fixes

**Full Changelog**: https://github.com/parashardhapola/scarf/compare/0.28.0...0.28.1

0.28.0

What's Changed
* Feature/harmony by parashardhapola in https://github.com/parashardhapola/scarf/pull/91
* Added HTO demultiplexing feature by parashardhapola in https://github.com/parashardhapola/scarf/pull/92
* Added support for reading unfiltered cellranger h5 files by parashardhapola in https://github.com/parashardhapola/scarf/pull/93
* Improvements in `make_bulk` by parashardhapola in https://github.com/parashardhapola/scarf/pull/94
* Improvements in `run_marker_search` speed


**Full Changelog**: https://github.com/parashardhapola/scarf/compare/0.26.3...0.28.0

Page 3 of 12

© 2024 Safety CLI Cybersecurity Inc. All Rights Reserved.